miRNA Family | Populus Predicted Target | Homolog in Arabidopsis | Target Predicted Function |
---|---|---|---|
miRNA with target predicted in Populus with homolog in Arabidopsis | |||
ptr-miR7000* | CX173939 | At4g12800.1 | Photosystem I reaction center subunit |
ptr-miR7001 | DT522234 | At1g12230.1 | Transaldolase ToTAL2 |
ptr-miR7002 | TA2404_3696 | At3g54190 | Hypothetical protein |
ptr-miR7006 | TA2404_3696 | At3g54190 | Hypothetical protein |
ptr-miR7007 | Grail3.0035010701 | At4g17980 | No apical meristem (NAM) |
 | EstExt_fgenesh4_pg.C_LG_II1399 | At1g33060 | Transcription factor (ANAC014) |
ptr-miR7009-1 | Eugene3.00060403 | At2g41450 | PAXIP1L protein |
 | Fgenesh4_pg.C_LG_XII000915 | At1g66350 | Scarecrow transcription factor |
ptr-miR7009-2 | Eugene3.00060403 | At2g41450 | PAXIP1L protein |
 | Fgenesh4_pg.C_LG_XII000915 | At1g66350 | Scarecrow transcription factor |
ptr-miR7009-3 | Eugene3.00060403 | At2g41450 | PAXIP1L protein |
 | Fgenesh4_pg.C_LG_XII000915 | At1g66350 | Scarecrow transcription factor |
ptr-miR7009-4 | Eugene3.00060403 | At2g41450 | PAXIP1L protein |
 | Fgenesh4_pg.C_LG_XII000915 | At1g66350 | Scarecrow transcription factor |
ptr-miR7010 | Gw1.X.2191.1 | At3g12530 | DNA replication protein-related |
 | Gw1.41.327.1 | At4g09350 | DNAJ heat shock |
ptr-miR7013 | EstExt_Genewise1_v1.C_LG_V0549 | At1g34190 | No apical meristem (NAM) |
 | Fgenesh4_pm.C_scaffold_29000148 | At2g38250 | DNA-binding protein-related |
 | Eugene3.00110906 | At1g53140 | Dynamin family protein |
 | EstExt_fgenesh4_pg.C_LG_II1399 | At1g33060 | Transcription factor (ANAC014) |
 | EstExt_fgenesh4_pg.C_LG_XIV0205 | At4g17980 | Transcription factor (ANAC071) |
ptr-miR7015 | Fgenesh4_pg.C_LG_XVIII000967 | At2g24300 | Calmodulin-binding protein |
 | Gw1.245.24.1 | At5g36930 | Toll-Interleukin-Resistance (TIR) |
 | EstExt_Genewise1_v1.C_LG_XVIII0864 | At5g11790 | Ndr family protein |
 | Eugene3.00190231 | At4g27220 | ATP binding |
 | Gw1.245.9.1 | At5g36930 | TIR-NBS-LRR |
 | Gw1.3272.9.1 | At5g36930 | TIR-NBS-LRR |
 | Gw1.I.4710.1 | At5g36930 | TIR-NBS-LRR |
 | Gw1.XI.1412.1 | At5g36930 | TIR-NBS-LRR |
 | Gw1.XI.1580.1 | At5g36930 | TIR-NBS-LRR |
ptr-miR7018 | Grail3.0033032901 | At2g45620 | Nucleotidyltransferase |
 | Fgenesh4_pg.C_LG_VIII001448 | At5g43630 | Nucleic acid binding |
ptr-miR7021 | Gw1.117.167.1 | At5g36930 | TIR-NBS-LRR class |
ptr-miR7022 | TA14145_3694 | At5g41680.2 | Putative senescence-associated |
ptr-miR7023 | CN519776 | At5g15270.1 | KH domain-containing protein |
 | Eugene3.00041046 | At5g15270 | KH domain-containing protein |
 | TA578_3690 | At4g09350 | Hypothetical protein |
 | Fgenesh4_pg.C_scaffold_70000157 | At3g06350 | Dehydroquinate dehydratase |
 | Gw1.41.327.1 | At4g09350 | DNAJ heat shock |
 | Gw1.I.8684.1 | At4g23740 | Kinase protein |
 | Gw1.X.2191.1 | At3g12530 | DNA replication protein Psf2 |
ptr-miR7024 | EstExt_fgenesh4_pg.C_LG_IX0044 | At1g76310 | B-like cyclin |
 | EstExt_fgenesh4_pg.C_LG_XVI0015 | At5g47630 | Acyl carrier family protein (ACP) |
 | Grail3.0083002901 | At5g49980 | F-box |
ptr-miR7025 | DN496261 | At3g19830 | C2 domain-containing protein |
ptr-miR7032 | TA4511_293756 | At3g05560.1 | 60S ribosomal protein |
ptr-miR7033-1 | Fgenesh4_pg.C_LG_III000186 | At5g57010 | Calmodulin-binding family protein |
ptr-miR7033-2 | Fgenesh4_pg.C_LG_III000186 | At5g57010 | Calmodulin-binding family protein |
ptr-miR7033-3 | Fgenesh4_pg.C_LG_III000186 | At5g57010 | Calmodulin-binding family protein |
ptr-miR7033-4 | Fgenesh4_pg.C_LG_III000186 | At5g57010 | Calmodulin-binding family protein |
ptr-miR7034 | Fgenesh4_pg.C_LG_XII000915 | At4g08250 | Scarecrow transcription factor |
ptr-miR7035 | Eugene3.00020435 | At4g30720 | Expressed protein |
ptr-miR7036 | Eugene3.00020435 | At3g63390 | Expressed protein |
ptr-miR7040-1* | TA11116_113636 | At4g27220.1 | NBS-LRR type disease resistance |
ptr-miR7040-2* | TA11116_113636 | At4g27220.1 | NBS-LRR type disease resistance |
ptr-miR7041 | CK096204 | At5g53130.1 | Cyclic nucleotide-gated channel C |
 | TA14492_3694 | At5g28450.1 | Chlorophyll a-b binding 7 |
 | TA16704_3694 | At1g80550 | Hypothetical protein |
 | TA20868_47664 | At5g53130.1 | Cyclic nucleotide-gated channel C |
ptr-miR7042 | CK092266 | At5g27380.1 | Glutathione synthetase |
ptr-miR7044 | TA1634_80863 | At3g59480.1 | Putative fructokinase 2 |
ptr-miR7046-1 | EstExt_Genewise1_v1.C_1840054 | At1g17860 | Trypsin and protease inhibitor |
ptr-miR7046-2 | EstExt_Genewise1_v1.C_1840054 | At1g17860 | Trypsin and protease inhibitor |
miRNA with annotated target predicted in Populus with no homolog in Arabidopsis | |||
ptr-miR7005** | AJ777690 | no | Polyphenol oxidase |
 | Eugene3.00100932 | no | Polyphenol oxidase |
ptr-miR7012 | CK110871 | no | Hypothetical protein |
ptr-miR7014** | AJ777690 | no | Polyphenol oxidase |
ptr-miR7016 | AJ773830 | no | Hypothetical protein |
 | TA3964_3691 | no | Ac1147-like protein |
 | TA7847_3695 | no | CDH1-D |
ptr-miR7017 | Gnl|PPLGI|CK106645 | no | Hypothetical protein |
ptr-miR7019 | Gnl|PPLGI|TC19799 | no | Histidine kinase like ATPase |
ptr-miR7020 | AJ773830 | no | Hypothetical protein |
 | TA3964_3691 | no | Ac1147-like protein |
 | TA7847_3695 | no | CDH1-D [Gallus gallus (Chicken)] |
ptr-miR7030 | AJ777857 | no | Polyphenol oxidase |
 | DN483929 | no | Polyphenol oxidase |
 | TA14535_3695 | no | Polyphenol oxidase |
ptr-miR7037 | TA12949_3694 | no | Hypothetical protein ART3 |
miRNA with target predicted non-annotated in Populus with no homolog in Arabidopsis | |||
ptr-miR7003 | Gnl|PPLGI|TC35094 | no | - |
ptr-miR7004 | BU871048 | no | - |
ptr-miR7014 | Eugene3.89590001 | no | - |
ptr-miR7026 | DN487711 | no | - |
ptr-miR7029-1 | CV259704 | no | - |
 | CV259944 | no | - |
 | DT491789 | no | - |
ptr-miR7029-2 | CV259704 | no | - |
 | CV259944 | no | - |
 | DT491789 | no | - |
ptr-miR7029-3 | CV259704 | no | - |
 | CV259944 | no | - |
 | DT491789 | no | - |
ptr-miR7039 | CV230379 | no | - |
ptr-miR7047 | BU873871 | no | - |