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Table 7 Proteins restricted to several archaeal lineages

From: Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis

(a) Proteins only found in Thermococci, Archaeoglobus and methanogens

PAB0076

[NP_125818]

CDD15620

PAB1291

[NP_127284]

CDD41906

PAB0138

[NP_125896]

CDD9576

PAB1584

[NP_126876]

COG4072

PAB0965

[NP_127127]

CDD15705

PAB1860

[NP_126440]

 

PAB19271

[NP_126347]

CDD29323

PAB0813

[NP_126902]

COG1630

PAB1994

[NP_126245]

CDD9568

PAB0853

[NP_126970]

 

PAB0036

[NP_125764]

 

PAB1251

[NP_127332]

endonuclease COG3780

PAB0054

[NP_125787]

CDD41919

PAB1779

[NP_126559]

CDD43950

PAB0176

[NP_125948]

CDD43579

PAB18062

[NP_126515]

CDD43599

PAB1127

[NP_127394]

CDD30177

PAB2413

[NP_126288]

COG1710

(b) Proteins unique to Thermococci + Archaeoglobus

PAB0981

[NP_127155]

 

PAB1672

[NP_126731]

 

PAB0982

[NP_127156]

 

PAB3017

[NP_125737]

 

PAB0985

[NP_127159]

 

PAB7298

[NP_126858]

 

(c) Proteins mainly shared by Halobacteria and some methanogens

VNG0240C3

[AAG18840]

COG4031

VNG2315H

[AAG20425]

MC1 CDD45747

VNG1236C

[AAG19598]

 

VNG2508C

[AAG20570]

Cyo COG4083

VNG1611C

[AAG19875]

COG4749

VNG2524H

[AAG20585]

 

VNG1670C

[AAG19921]

COG3612

VNG2669G

[AAG20696]

 

VNG1891H

[AAG20086]

    

(d) Proteins mainly shared by Thermoplasmata and Sulfolobus

Ta0035

[NP_393514]

COG5592

Ta1440

[NP_394894]

 

Ta0164

[NP_393642]

 

Ta1453

[NP_394906]

 

Ta0165

[NP_393643]

 

Ta1507

[NP_394957]

CDD29645

Ta0267

[NP_393747]

CDD43623

Saci_0040

[YP_254763]

 

Ta0308

[NP_393788]

 

Saci_0054

[YP_254777]

 

Ta0347

[NP_393826]

TauA CDD31059

Saci_0055

[YP_254778]

 

Ta0547

[NP_394021]

 

Saci_0322

[YP_255031]

 

Ta0548m4

[NP_394022]

 

Saci_0323

[YP_255032]

 

Ta0583

[NP_394007]

 

Saci_0979

[YP_255633]

SdhD

Ta0759

[NP_394223]

 

Saci_1065

[YP_255715]

 

Ta0793a

[NP_394256]

 

Saci_1491

[YP_256105]

CDD40171

Ta0938

[NP_394396]

 

Saci_1560

[YP_256166]

 

Ta0939

[NP_394397]

PQQC CDD45213

Saci_1747

[YP_256346]

SoxE CDD46414

Ta1156

[NP_394612]

 

Saci_1952

[YP_256548]

 

Ta1345

[NP_394801]

 

Saci_2078

[YP_256665]

 
  1. Note 1. A homolog to PAB1927 is also found in Rubrobacter xylanophilus DSM 9941;
  2. Note 2. A homolog to PAB1806 is also found in Aquifex aeolicus VF5;
  3. Note 3. A homolog to VNG0240c is also found in Methanopyrus kandleri;
  4. Note 4. Two low-scoring homologs for Ta0548 are also found in Gloeobacter violaceus PCC 7421.
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BMC Genomics

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