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Table 1 Microarray detection frequencies for various cytokines in human kidney samples.

From: A meta-analysis of kidney microarray datasets: investigation of cytokine gene detection and correlation with rt-PCR and detection thresholds

 

Probe Set ID

Gene Name

Total samplesa

%P ALL

%P Normal (n = 15)

%P Transplant (n = 36)

%P Cancer (n = 30)

1

224211_at

Forkhead box P3 (FoxP3)

60

0%

 

0%

0%

2

221333_at

Forkhead box P3 (FoxP3)

81

0%

0%

0%

0%

3

221334_s_at

Forkhead box P3 (FoxP3)

81

7%

0%

0%

20%

4

202727_s_at

Interferon gamma receptor 1 (IFNγ-R1)

81

100%

100%

100%

100%

5

242903_at

Interferon gamma receptor 1 (IFNγ-R1)

60

100%

 

100%

100%

6

211676_s_at

Interferon gamma receptor 1 (IFNγ-R1)

81

99%

100%

97%

100%

7

201642_at

Interferon gamma receptor 2

81

91%

80%

89%

100%

8

210354_at

Interferon, gamma (IFNγ)

81

10%

0%

3%

23%

9

208200_at

Interleukin 1, alpha

81

63%

33%

53%

90%

10

210118_s_at

Interleukin 1, alpha

81

1%

0%

0%

3%

11

39402_at

Interleukin 1, beta

81

38%

33%

47%

30%

12

205067_at

Interleukin 1, beta

81

6%

20%

3%

3%

13

207849_at

Interleukin 2

81

4%

7%

6%

0%

14

207906_at

Interleukin 3

81

0%

0%

0%

0%

15

207539_s_at

Interleukin 4

81

0%

0%

0%

0%

16

207538_at

Interleukin 4

81

0%

0%

0%

0%

17

207952_at

Interleukin 5

81

0%

0%

0%

0%

18

205207_at

Interleukin 6 (IL-6)

81

60%

73%

64%

50%

19

206693_at

Interleukin 7

81

64%

40%

64%

77%

20

241808_at

Interleukin 7

60

72%

 

42%

100%

21

202859_x_at

Interleukin 8

81

65%

53%

50%

90%

22

211506_s_at

Interleukin 8

81

14%

20%

0%

27%

23

208193_at

Interleukin 9

81

1%

0%

0%

3%

24

207433_at

Interleukin 10 (IL-10)

81

4%

7%

0%

7%

25

206924_at

Interleukin 11

81

0%

0%

0%

0%

26

206926_s_at

Interleukin 11

81

0%

0%

0%

0%

27

207844_at

Interleukin 13

81

0%

0%

0%

0%

28

203085_s_at

Transforming growth factor, beta 1 (TGF-β1)

81

49%

67%

0%

100%

29

203084_at

Transforming growth factor, beta 1 (TGF-β1)

81

1%

0%

0%

3%

30

207113_s_at

Tumor necrosis factor, alpha (TNF-α)

81

9%

0%

0%

23%

  1. a For each probeset the total number of samples was either 60 or 81. The U133A does not contain all of the probesets from the U133Plus2.0. U133A data was used for 15 "Normal" and 6 "Transplant" samples.