Table 2 List of Elements in the C. elegans genome
From: De novo identification of LTR retrotransposons in eukaryotic genomes
Cluster | Family notation from previous work | # of Intact LTRs (from previous work) | Avg. Identity between LTRs (%) | # of Solo LTRs (from previous work) |
|---|---|---|---|---|
LTR_CE1 | Cer1 | 1(1) | 99.8 | 3(3) |
LTR_CE2 | Cer2 | 1(1) | 99.2 | 5(4) |
LTR_CE3 | Cer3 | 2(1) | 99.8 | 12(11) |
LTR_CE4 | Cer4 | 1(1) | 99.3 | 0(0) |
LTR_CE5 | Cer5 | 2(1) | 98.95 | 13(13) |
LTR_CE6 | Cer6 | 1(1) | 99.1 | 7(5) |
LTR_CE7 | Cer7 | 1(1) | 99.7 | 1(1) |
LTR_CE8 | Cer8/Cer9 | 8(2/3) | 98.25 | 8(1/8) |
LTR_CE9 | Cer10 | 1(1) | 99.5 | 5(4) |
LTR_CE10 | Cer12/Cer16 | 6(1/2) | 98.2 | 28(14/13) |
LTR_CE11 | Cer13 | 1(1) | 98.8 | 2(1) |
LTR_CE12 | Cer15 | 3(2) | 98.8 | 4(5) |
LTR_CE13 | Cer17 | 1(1) | 99.7 | 0(0) |
LTR_CE14 | Cer19 | 2(1) | 99.75 | 8(10) |
LTR_CE15 | Cer20 | 2(3) | 97.6 | 9(5) |
LTR_CE16 | Â | 1 | 96.4 | 0 |
LTR_CE17 | Â | 3 | 84.23 | 17 |
LTR_CE18 | Â | 4 | 96.75 | 21 |
LTR_CE19 | Â | 1 | 97.8 | 2 |
LTR_CE20 | Â | 1 | 99.0 | 45 |
LTR_CE21 | Â | 1 | 98.8 | 0 |
LTR_CE22 | Â | 1 | 99.4 | 2 |
LTR_CE23 | Â | 3 | 92.9 | 27 |
LTR_CE24 | Â | 1 | 98.3 | 0 |
LTR_CE25 | Â | 1 | 97.2 | 0 |
LTR_CE26 | Â | 1 | 97.2 | 0 |
LTR_CE27 | Â | 1 | 99.3 | 2 |
LTR_CE28 | Â | 1 | 99.5 | 0 |
LTR_CE29 | Â | 1 | 99.2 | 22 |
LTR_CE30 | Â | 2 | 86.5 | 0 |
LTR_CE31 | Â | 1 | 99.3 | 0 |
LTR_CE32 | Â | 1 | 99.1 | 0 |
LTR_CE33 | Â | 2 | 98.6 | 1 |
LTR_CE34 | Â | 6 | 96.88 | 42 |
LTR_CE35 | Â | 1 | 99.6 | 1 |
LTR_CE36 | Â | 1 | 99.0 | 0 |
LTR_CE37 | Â | 2 | 97.35 | 0 |