From: De novo identification of LTR retrotransposons in eukaryotic genomes
Cluster | Family notation from previous work | # of Intact LTRs (from previous work) | Avg. Identity between LTRs (%) | # of Solo LTRs |
---|---|---|---|---|
LTR_DM1 | 1731 | 4 (n/a, 1) | 99.3 | 15 |
LTR_DM2 | 17.6 | 16 (6, 7) | 99.5 | 29 |
LTR_DM3 | 297 | 38 (10, 18) | 99.8 | 55 |
LTR_DM4 | 412 | 28 (18, 24) | 99.8 | 16 |
LTR_DM5 | bel | 4 (n/a, 4) | 99.6 | 13 |
LTR_DM6 | blastopia | 16 (6, 13) | 100.0 | 4 |
LTR_DM7 | blood | 23 (21, 22) | 99.8 | 16 |
LTR_DM8 | burdock | 13 (1, 7) | 99.4 | 24 |
LTR_DM9 | copia | 30 (n/a, 26) | 99.6 | 8 |
LTR_DM10 | gypsy | 8 (n/a, 1) | 97.9 | 52 |
LTR_DM11 | HMS beagle | 17 (8, 9) | 98.4 | 42 |
LTR_DM12 | idefix | 4 (n/a, 2) | 98.7 | 69 |
LTR_DM13 | mdg1 | 19 (4, 13) | 99.9 | 23 |
LTR_DM14 | mdg3 | 13 (8, 8) | 99.2 | 16 |
LTR_DM15 | micropia | 3 (1, 2) | 100.0 | 10 |
LTR_DM16 | nomad | 16 (4, 16) | 99.9 | 23 |
LTR_DM17 | roo | 98 (40, 58) | 99.7 | 96 |
LTR_DM18 | springer | 17 (n/a, 5) | 99.3 | 75 |
LTR_DM19 | stalker | 25 (n/a, 3) | 98.3 | 104 |
LTR_DM20 | tirant | 21 (6, 15) | 99.8 | 32 |
LTR_DM21 | transpac | 5 (4, 5) | 99.7 | 7 |
LTR_DM22 | ZAM | 3 (n/a, 0) | 96.1 | 9 |
LTR_DM44 | Â | 5 | 99.1 | 62 |
LTR_DM60 | Â | 7 | 97.6 | 24 |
LTR_DM63 | Â | 5 | 99.2 | 91 |
LTR_DM64 | Â | 13 | 96.9 | 122 |
LTR_DM66 | Â | 10 | 99.7 | 93 |
LTR_DM67 | Â | 6 | 96.5 | 95 |
LTR_DM70 | Â | 9 | 99.5 | 5 |
LTR_DM74 | Â | 8 | 95.8 | 58 |
LTR_DM77 | Â | 9 | 99.0 | 16 |
LTR_DM79 | Â | 8 | 98.4 | 32 |
LTR_DM80 | Â | 7 | 98.6 | 18 |
LTR_DM82 | Â | 11 | 99.2 | 46 |
LTR_DM88 | Â | 6 | 97.5 | 57 |
LTR_DM90 | Â | 7 | 99.4 | 30 |
LTR_DM97 | Â | 8 | 95.1 | 38 |
LTR_DM100 | Â | 6 | 99.1 | 18 |
LTR_DM103 | Â | 5 | 94.8 | 197 |
LTR_DM106 | Â | 5 | 99.2 | 109 |
LTR_DM107 | Â | 7 | 99.1 | 27 |
LTR_DM111 | Â | 5 | 97.9 | 17 |