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Table 3 Relative quantitative expression and Copy number status of the genes/gene fragments tagged with GACA & GATA repeat motifs, originating from different somatic/gonadal tissues and spermatozoa#

From: Organization and differential expression of the GACA/GATA tagged somatic and spermatozoal transcriptomes in Buffalo Bubalus bubalis

S.N.

Clone ID

Accession Numbers

Relative expression in different tissues (in folds)

Relative expression in spermatozoa from four buffaloes

Copy number status per haploid genome

   

Testis

Ovary

Spleen

Liver

Lung

Kidney

Heart

SP1

SP2

SP3

SP4

  

A. For transcripts tagged with GACA repeat motif

In blood

In germline

1.

pJC40

DQ494483

194

21

23

17

2

Cb

3

274

181

147

239

  

2.

pJC42

DQ494485

32

8

2

30

7

51

Cb

29

17

21

27

2–3

2–3

3.

pJC52

DQ534910

512

32

34

83

24

60

Cb

6

9

5

7

3

3

4.

pJC54

DQ834345

208

28

15

69

3

Cb

1

107

119

97

157

1

1

5.

pJC29

DQ289479

15

10

13

45

Cb

20

22

49

52

32

45

1

1

6.

pJC35

DQ304116

147

24

51

45

3

Cb

3

39

32

51

39

1–2

1–2

7.

pJC44

DQ534902

44

21

17

34

11

25

Cb

97

111

97

128

1

1

8.

pJC46

DQ534904

7

6

2

18

3

Cb

3

14

22

11

12

2

2

9.

pJC47

DQ534905

34

11

14

91

Cb

14

2

73

97

87

84

1

1

10.

pJC49

DQ534907

3521

891

330

637

238

Cb

630

2896

4792

2702

3326

1

1

11.

pJC51

DQ534909

1663

157

338

2521

3

5

Cb

362

239

512

676

1

1

12.

pJC53

DQ834344

17

13

5

29

4

Cb

45

18

14

12

16

2

2

13.

pJSC11

DQ845144

4390

1176

664

1097

Cb

2

1195

6616

5120

8526

7342

25–65

30–65

14.

pJSC1

DQ789045

46

35

40

36

12

15

Cb

36

21

23

27

1

1

16.

pJSC3

DQ789047

156

45

12

87

Cb

2

37

1176

724

776

1440

1

1

17.

pJSC4

DQ789048

149

222

376

34

Cb

10

6

675

630

608

588

2

2

18.

pJSC5

DQ789049

128

2

2

9

2

Cb

2

62

47

41

38

2

2

19.

pJSC6

DQ834346

31

21

30

14

Cb

13

51

52

97

84

55

1

1

20.

pJSC9

DQ845142

53

4

3

4

3

Cb

3

15

14

15

14

2

2

21.

pJSC10

DQ845143

3

3

12

4

Cb

14

3

6

4

9

3

3

3

22.

pJSC12

DQ845145

91

6

28

52

2

6

Cb

138

97

119

97

1

1

23.

pJSC13

DQ845146

228

181

246

34

2

74

Cb

1782

1910

1097

1351

1

1

24.

pJSC15

DQ904037

39

4

26

13

Cb

5

2

49

35

45

39

8–13

8–10

25.

pJSC16

DQ904038

31

Cb

14

9

2

2

1

117

112

127

118

1

1

26.

pJSC17

DQ904039

27

22

19

15

9

16

Cb

14

29

18

20

1

1

27.

pJSC18

DQ913640

18

7

42

28

Cb

9

2

34

23

42

23

1

1

28.

pJSC19

DQ913641

85

24

35

28

2

13

Cb

69

68

83

52

2

2

29.

pJSC20

DQ913642

89

74

88

81

Cb

65

74

81

88

71

82

1

1

30.

pJSC22

DQ913644

Cb

4

4

2

2

8

3

75

69

54

61

2–3

2

31.

pJSC23

DQ913645

2

2

12

4

10

2

Cb

55

73

41

67

1

1

32.

pJSC24

DQ913646

2

1

12

2

Cb

2

1

48

27

42

32

1

1

33.

pJSC25

DQ916743

149

127

104

21

109

64

Cb

239

194

195

256

1

1

B. For transcripts tagged with GATA repeat motif

  

1.

pJSC28

EF050082

114

58

16

5

Cb

2

3

51

48

34

42

2–4

2–4

2.

pJSC30

EF050084

169

20

65

48

Cb

1

1

168

128

113

137

1

1

3.

pJSC31

EF051516

65

30

23

35

Cb

10

5

59

48

53

43

2

2

4.

pJSC32

EF051517

326

33

28

52

Cb

8

3

1351

1261

1351

1261

1

1

5.

pJSC33

EF051518

239

57

14

68

2

44

Cb

42

68

55

73

3–5

3–5

6.

pJSC34

EF051519

490

78

19

14

Cb

37

3

589

510

465

610

2

2

7.

pJC87

EF592582

386

39

14

9

Cb

2

3

314

296

357

260

1

1

8.

pJC88

EF592583

134

87

93

102

4

15

Cb

201

174

124

145

1–2

1–2

  1. # The expression for gene fragments tagged with GACA repeat is described in (A) whereas for GATA-tagged ones in (B). Note the highest expression of most of the GACA-tagged and all GATA-tagged genes in testis and/or spermatozoa.
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BMC Genomics

ISSN: 1471-2164

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