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Table 1 Selected list of modulated grape transcripts.

From: cDNA-AFLP analysis of plant and pathogen genes expressed in grapevine infected with Plasmopara viticola

TDF

Primer comb.

Accession

Lenght (bp)

I/R

Annotation

Blast score Blastn/Blastx*

Metabolism

192

TC – CA

TC52910

301

+

Sucrose synthase (Q9SLS2)

3.12E-63

1627

TT – CT

TC57852

168

+

UDP-glucosyltransferase HRA25 (Q9FUJ6)

2.07E-30

245

TA – AC

TC53221

169

+

Transketolase, chloroplast precursor (O20250)

1.92E-29

18

TT – AA

TC67193

127

+

Raffinose synthase, partial (Q8VWN6)

9.26E-21

1279

CT – TC

TC52362

175

+

Fatty acid multifunctional protein (Q9ZPI5)

1.12E-16

134

TC – TT

TC67104

390

+

12-oxophytodienoate-10,11-reductase 1 (Q8LAH7)

6.19E-24

993

CA – CA

TC60564

50

+

Gibberellin 2-oxidase (Q6TN17)

3.63E-105

215

TT – TA

TC55722

216

+

Fatty acid hydroperoxide lyase (Q9AUD8)

5.62E-72

152

TC – TC

Q6X5R6

342

+

(Lox2) Lipoxygenase

4.00E-39 *

1036

CC – AT

TC58112

349

+

Long-chain acyl-CoA oxidase (O64894)

5.62E-72

1225

CT – AC

TC53311

359

+

3-ketoacyl-CoA thiolase (Q6TXD0)

2.10E-09

893

CA – AC

TC67959

104

+

3-beta-hydroxy-delta5-steroid dehydrogenase

9.77E-16

347

TA – CG

TC54708

181

+

40S ribosomal protein S16 (Q9M5L1)

2.91E-18

1382

CG – TA

TC58494

279

+

Ribosomal L10 protein (Q874B2)

2.62E-56

1345

CG – AA

TC51894

289

+

Ubiquitin conjugating enzyme E2 (Q42897)

6.56E-55

594

TG – GA

TC60588

186

+

Proteasome subunit beta type 5-B precursor (Q9LIP2)

5.35E-37

1493

CT – GG

TC56558

399

+

Gamma-glutamylcysteine synthetase (Q6F4I8)

4.64E-35

1293

CT – TG

TC51806

244

+

Cysteine synthase (Q43317)

3.08E-25

79

TC – AC

TC68684

457

+

Cellulose synthase-like protein D4 (Q8GUZ9)

2.09E-96

1594

TT – TC

TC65238

179

+

Tubulin alpha chain, partial (P33629)

4.78E-34

232

TA – AT

TC57434

161

-

Nucleotide sugar epimerase-like protein

8.83E-12

1630

TT – CT

Q9ZTP5

105

-

Pentose-5-phosphate 3-epimerase

5.85E-10 *

1610

TT – CA

TC54570

167

-

Sedoheptulose-bisphosphatase (Q940F8)

1.37E-27

1668

TT – GT

TC54602

412

-

Fructose-bisphosphate aldolase (Q6RUF6)

1.47E-50

100

TC – AG

TC54851

224

-

Alpha-mannosidase (Q2R3E0)

9.53E-43

1567

CG – GT

TC57827

211

-

Galactose dehydrogenase, (Q84LI1)

4.13E-33

255

TA – AG

TC52686

210

-

Carbonic anhydrase (Q5NE20)

2.18E-39

1472

CT – GC

TC60916

581

-

Glyceraldehyde-3-phosphate dehydr. B subunit

1.61E-126

1205

CT – AT

TC62475

182

-

Lipase class 3-like (Q6K2K7)

6.71E-33

1689

TT – GG

TC53435

141

-

B-keto acyl reductase (O24479)

4.93E-24

670

CA – GA

TC62496

145

-

3-hydroxy-3-methylglutaryl coenzyme A (Q8W2E3)

6.52E-12

151

TC – TC

Q8H539

358

-

Steroid 5alpha-reductase-like protein

1.00E-32*

1239

CT – AG

TC69679

98

-

60S ribosomal protein L19 (Q6RYC4)

1.65E-13

138

TC – TT

TC59193

99

-

Protein translation factor SUI1 homolog 2 (Q94JV4)

1.49E-12

308

TA – CA

TC51783

621

-

Elongation factor 1-beta 1 (Q84WM9)

1.99E-64

823

TC – GG

TC54220

542

-

Phytocalpain (Q6SSJ2)

3.95E-39

1174

CC – CC

TC63107

115

-

Chaperone protein dnaJ-like (Q6H3Y3)

9.58E-18

1530

CC – GC

CB348741

62

-

F-box protein family AtFBL5

1.37E-12

1476

CT – GC

CA816379

345

-

Protein At3g07360 (U-box domain-containing prot.)

2.37E-69

1389

CG – TT

TC65574

203

-

Glycin-rich protein (Q43688)

3.13E-35

1546

CG – GA

TC68519

541

-

Expansin, complete (Q84US7)

8.40E-112

722

TC – CT

TC69230

350

-

Cyclin D1, partial (Q8GVE0)

1.73E-69

664

CA – GA

TC53870

228

-

Integral membrane protein-like (Q5VRH)

7.89E-07

Photosyntesis and Energy

1330

CT – CC

TC61438

646

+

Cytochrome P450 monooxygenase (Q2MJ14)

1.38E-67

123

TC – TA

TC68921

64

+

C-type cytochrome biogenesis protein (Q7XY14)

1.08E-06

227

TA – AT

TC62259

353

-

ATP synthase B' chain, chloroplast precursor

1.03E-66

749

TC – CG

TC63430

230

-

NADPH-cytochrome P450 oxydoreductase

1.20E-29

520

TG – TG

TC65998

102

-

Plastocyanin, chloroplast precursor (P17340)

6.20E-06

1247

CT – TA

TC66316

365

-

Chloroplast photosystem II 10 kDa protein (Q2PXN6)

5.90E-58

1156

CC – CT

TC68056

154

-

NADH-plastoq. oxidoreductase subunit 7 (Q2L953)

2.39E-26

1049

CC – AC

TC53584

561

-

Magnesium chelatase subunit, partial

1.28E-121

31

TT – AT

TC55659

163

-

Chlorophyll A/B binding protein precursor (Q32291)

1.79E-32

427

TG – TA

TC57132

209

-

Chlorophyll A/B binding protein, precursor (P13869)

3.62E-42

4

TT – AA

TC55138

381

-

Photosystem I assembly protein ycf3, partial

2.10E-78

1115

CC – TC

TC61693

411

-

Photosystem I reaction center subunit II (P12372)

2.51E-84

1322

CT – CT

TC66994

275

-

Photosystem II reaction center (Q8W536)

2.26E-52

161

TC – TC

TC58978

146

-

Photosystem II M protein (Q6QXV8)

3.80E-25

1393

CG – TT

TC58567

103

-

Apocytochrome f precursor (Q68RZ3)

4.92E-10

Transport

1614

TT – CA

Q3L7K6

185

+

Hexose transporter

6.26E-08 *

680

CA – GT

TC52346

231

-

Transporter-like protein (Q9LSH7)

3.88E-47

249

TA – AC

TC66367

107

-

14-3-3 protein (Q93XW1)

1.13E-16

1534

CC – GG

TC57372

435

-

Nitrate transporter NRT1-2 (Q9FRU5)

8.33E-94

1438

CG – CC

TC65826

270

-

ABC transporter-like protein (Q9FT51)

7.38E-50

133

TC – TT

TC62785

219

-

Calcium-transporting ATPase 8, plasma membr.

4.00E-23

662

CA – GA

TC69251

302

-

ATPase alpha subunit, complete (Q3C1H4)

7.47E-59

1679

TT – GC

BQ798655

127

-

Syntaxin {Glycine max}

5.39E-23

792

TC – GT

TC51721

180

-

ADP-ribosylation factor 1-like protein (Q70XK1)

2.22E-36

62

TT – AG

TC69827

195

-

Aquaporin PIP2 (Q2HZF5)

1.45E-20

Signal transduction

434

TG – TA

TC59460

147

+

Protein phosphatase 2C (Q8RVG0)

6.61E-23

240

TA – AC

Q52QR5

343

+

NAC domain protein NAC1

1.70E-71*

1385

CG – TA

TC55407

95

+

NAC family protein (Q2Z1Y1)

2.32E-13

687

CA – GT

TC70344

687

+

WRKY DNA-binding protein 32 (P59583)

1.24E-05

235

TA – AT

TC52484

102

-

SOS2-like protein kinase (Q8LK24)

1.58E-12

1298

CT – TG

TC60214

164

-

Calcium-transporting ATPase/calmodulin binding

2.74E-28

288

TA – TC

TC52400

212

-

Calmodulin cam-207 (Q6DN29)

1.23E-39

1538

CC – GG

TC66781

267

-

CNGC2 (Q5D6H2)

1.22E-47

633

TG – GC

TC69501

633

-

Calcium sensor calcineurin B-like protein (Q4W3B4)

1.02E-34

11

TT – AA

TC61968

289

-

Protein At1g01140 (CBL-interacting protein kinase)

7.34E-54

778

TC – GA

TC53469

55

-

MAPKK (Q66MH6)

8.34E-07

1573

CG – GC

TC59576

700

-

Receptor-like kinase with LRR repeats (Q70AH8)

1.44E-32

1231

CT – AG

TC52043

339

-

MADS-box transcription factor FBP29 (Q9ATE2)

2.44E-72

Secondary metabolism

1539

CC – GG

TC52853

419

+

Cinnamyl alcohol dehydrogenase (Q2Z1Z0)

2.21E-08

909

CA – AG

TC53668

105

+

Stilbene synthase [Vitis vinifera]

5.34E-17

1249

CT – TA

TC54354

273

-

Secretory laccase (Q6TDS6)

1.11E-23

421

TG – AG

TC51729

113

-

Caffeoyl-CoA O-methyltransferase (Q43237)

5.87E-17

362

TG – AA

TC53331

208

-

Flavanone 3-hydroxylase-like protein, (Q9FLV0)

2.88E-34

432

TG – TA

TC65435

179

-

Limonoid UDP-glucosyltransferase (Q9MB73)

1.29E-32

Defence response

1176

CC – CG

TC63410

557

+

Beta-1,3-glucanase (Q9M563)

5.95E-120

68

TT – AG

TC56756

108

+

Pathogenesis-related protein 10.3 (Q20BD2)

6.31E-14

724

TC – CT

TC56512

253

-

Pollen allergen-like protein, partial {A. thaliana}

1.09E-49

1296

CT – TG

TC62916

157

-

EXECUTER1 protein (Q93YW0)

1.72E-27

692

CA – GC

TC57989

251

-

Avr9/Cf-9 rapidly elicited protein 276 (Q84QD7)

3.72E-23

229

TA – AT

TC70153

282

-

Flax-inducible sequence 1 (Q40255)

6.91E-56

1173

CC – CC

TC51855

262

-

Pto-like serine/threonine kinase (Q6W0C7)

1.69E-16

1545

CG – GA

TC58939

671

-

Ethylene-resp. element-binding factor (Q2QDF5)

3.13E-125

584

TA – GC

TC62111

83

-

Lipid transfer protein (Q93YX9)

4.49E-10

889

CA – AC

TC63540

305

-

DIR1 (At5g48485) {Arabidopsis thaliana}

2.98E-58

214

TT – TA

TC61755

233

-

Enzymatic resistance protein, complete (Q3S4G9)

1.61E-44

Response to stimulus

246

TA – AC

TC63756

153

+

Metallothionein-like protein (Q3HR41)

3.69E-27

945

CA – TT

TC53817

79

+

Thioredoxin H, (Q4U0W0)

1.68E-08

1275

CT – TC

TC53088

383

+

Glutathione S-transferase GST 24 (Q9FQD4)

7.96E-81

748

TC – CG

TC54876

240

+

Ferritin-3, chloroplast precursor (Q948P6)

2.59E-47

1631

TT – CT

Q6V7W6

84

+

Class III peroxidase GvPx2b

2.76E-04

1245

CT – TA

TC62299

380

-

Auxin-induced SAUR-like protein (Q8S351)

1.89E-79

1562

CG – GT

TC53184

397

-

Chloroplast small heat shock protein (Q6WHC0)

1.14E-80

781

TC – GA

TC53791

232

-

Catalase (Q7XTK9)

4.25E-45

532

TG – CT

TC56223

206

-

Peroxiredoxin Q (Q6QPJ6)

4.38E-37

  1. I/R: induced or repressed in cDNA-AFLP experiments.