Table 1 NAGNAG acceptors in Arabidopsis SR and SR-related protein-coding genes. In summary, 36 NAGNAG-containing introns occur in 30 genes. Genes are classified into SR and SR-related protein coding genes. Splicing ratios are given as absolute EST counts ("#"). Column 'heptamer motif' specifies the heptamer sequence of the NAGNAG acceptor sites used for the sequence-based prediction; here, "|" marks the annotated acceptor. Predicted E-transcript proportions are listed in column 'E-transcript predicted'. Gene names are grey shaded if they contain two NAGNAG acceptors.
Gene | Name | SR | SR-related | Intron | # ESTs E-transcript | # ESTs I-transcript | Heptamer motif | E-transcript predicted (%) |
|---|---|---|---|---|---|---|---|---|
At5g52040 | RS41 | x | Â | 2 | 5 | 17 | AAG|CAG,G | 7 |
At4g31580 | RSZ22 | x | Â | 3 | 15 | 0 | TAG|GAG,C | 99 |
At3g13570 | SCL30a | x | Â | 3 | 13 | 0 | TAG|GAG,G | 99 |
At1g55310 | SR33/SCL33 | x | Â | 3 | 0 | 8 | CAG,CAG|A | 48 |
At1g16610 | SR45 | x | Â | 7 | 0 | 12 | CAG,CAG|G | 48 |
At1g16610 | SR45 | x | Â | 9 | 0 | 12 | AAG,CAG|G | 7 |
At1g23860 | SRZ21 | x | Â | 3 | 13 | 0 | CAG|GAG,A | 100 |
At2g24590 | SRZ22a | x | Â | 3 | 8 | 0 | CAG|AAG,A | 98 |
At1g07350 | Â | Â | x | 2 | 21 | 0 | TAG|GAG,A | 100 |
At1g22910 | Â | Â | x | 1 | 7 | 0 | TAG|GAG,C | 99 |
At1g53650 | CID8 | Â | x | 4 | 7 | 0 | CAG|AAG,G | 97 |
At1g60000 | cp29 | Â | x | 1 | 6 | 0 | CAG|GAG,T | 100 |
At1g60900 | U2AF65 | Â | x | 2 | 3 | 0 | CAG|GAG,A | 100 |
At1g60900 | U2AF65 | Â | x | 4 | 0 | 2 | TAG,CAG|G | 17 |
At1g76940 | Â | Â | x | 1 | 2 | 0 | TAG|AAG,G | 83 |
At2g24350 | Â | Â | x | 4 | 0 | 2 | AAG,CAG|T | 7 |
At2g24350 | Â | Â | x | 1 | 5 | 0 | CAG|GAG,T | 100 |
At2g35410 | cp33 | Â | x | 3 | 16 | 0 | TAG|GAG,T | 100 |
At2g37220 | cp29 | Â | x | 2 | 22 | 0 | TAG|GAG,T | 100 |
At2g43370 | U11–35K |  | x | 4 | 0 | 6 | TAG,CAG|G | 17 |
At2g43370 | U11–35K |  | x | 5 | 5 | 0 | CAG|GAG,T | 100 |
At3g23830 | GR-RBP4/GRP4 | Â | x | 3 | 15 | 0 | CAG|GAG,T | 100 |
At3g26420 | ATRZ-1A | Â | x | 3 | 5 | 0 | TAG|AAG,G | 83 |
At3g51950 | Â | Â | x | 4 | 6 | 0 | CAG|GAG,G | 100 |
At3g54230 | Â | Â | x | 5 | 0 | 3 | GAG,CAG|G | 1 |
At3g54230 | Â | Â | x | 6 | 0 | 3 | TAG,CAG|C | 25 |
At4g35785 | Â | Â | x | 4 | 0 | 0 | CAG,AAG|T | 98 |
At4g36960 | Â | Â | x | 8 | 5 | 0 | TAG|GAG,A | 100 |
At5g02530 | Â | Â | x | 2 | 6 | 0 | TAG|GAG,A | 100 |
At5g03580 | PABP | Â | x | 1 | 0 | 1 | GAG,TAG|G | 0 |
At5g09880 | Â | Â | x | 1 | 5 | 0 | CAG|AAG,A | 98 |
At5g44200 | CBP20 | Â | x | 1 | 4 | 0 | CAG|GAG,A | 100 |
At5g44200 | CBP20 | Â | x | 7 | 6 | 0 | CAG|GAG,G | 100 |
At5g47320 | RPS19 | Â | x | 3 | 8 | 0 | TAG|GAG,T | 100 |
At5g53180 | PTB | Â | x | 7 | 0 | 7 | GAG,TAG|G | 0 |
At5g59950 | Â | Â | x | 1 | 0 | 11 | TAG,CAG|A | 7 |