Table 1 sRNAs transcripts observed in P. aeruginosa PAO1
From: Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species
Intergenic region a | Coordinates in PAO1 genome (bp) | 5' gene | 3' gene | sRNA | ||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | Dir.b | Length (bp) | Dir.b | Predicted length (nt)c | Observed length (nt)d | Dir.g | ||
491 | 912780–913085 | 1185 | < | 486 | > | 90 | 100, 200 | > |
622 | 1140860–1141267 | 1146 | > | 465 | > | 200, 300 | ? | |
645 | 1204782–1205770 | 1149 | > | 1767 | > | 300 ± 10 | 300 | < |
888 = ffs | 1668833–1669085 | 378 | > | 867 | < | 113 | 90 | > |
1059 | 1996807–1997508 | 1659 | < | 1041 | < | 150, 200, 300 | ? | |
1466 | 2918212–2918965 | 1041 | > | 534 | < | 300 | ? | |
1559 | 3112151–3112876 | 519 | > | 900 | > | 250, 300e | ? | |
1698 = rgsA | 3318657–3318881 | 1134 | > | 777 | < | 120 ± 10 | 100, 300 | > |
1714 | 3360654–3360873 | 1386 | < | 3474 | > | 200 | ? | |
1887 | 3705161–3705888 | 1995 | < | 603 | < | 210 ± 10 | 200 | < |
2315 | 4536493–4536919 | 660 | < | 1122 | < | 160 ± 10 | 180 | < |
2510 = rnpB | 4956029–4956732 | 452 | < | 849 | < | 208 | 200 | < |
2626 | 5196833–5197184 | 1464 | > | 576 | > | 200 | > | |
2667 = prrF1,2 | 5283906–5284368 | 798 | > | 888 | < | 110, 110 | 100, 110 f | >> |