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Table 4 20 deepest Agenae specific contigs

From: A pig multi-tissue normalised cDNA library: large-scale sequencing, cluster analysis and 9K micro-array resource generation

Name

contig depth

Best swissprot hit

Best SP hit accession

Best SP hit description

Best SP hit e-value

BX666702.1.p.sc.3

18

P04813

CTR2_CANFA

Chymotrypsinogen 2 precursor (EC 3.4.21.1)

1.00E-108

BX666408.1.p.sc.3

16

P08723

SPBP_RAT

Prostatic spermine-binding protein precursor (SBP)

7.00E-16

BX914621.1.p.sc.3

11

Q01167

FOXK2_HUMAN

Forkhead box protein K2 (Interleukin enhancer-binding factor 1)

0

BX671136.1.p.sc.3

9

Q29463

TRY2_BOVIN

Anionic trypsin precursor (EC 3.4.21.4)

1.00E-126

BX914474.1.p.sc.3

9

Q76G19

PDZK4_HUMAN

PDZ domain-containing protein 4

2.00E-81

BX666344.1.p.sc.3

8

Q9D269

CST11_MOUSE

Cystatin-11 precursor

1.00E-34

BX668876.1.p.sc.3

8

O75376

NCOR1_HUMAN

Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)

0

BX917545.1.p.sc.3

8

NONE

NONE

NONE

 

BX669605.1.p.sc.3

7

Q9P1Z0

ZBTB4_HUMAN

Zinc finger and BTB domain-containing protein 4

6.00E-54

BX670760.1.p.sc.3

7

P19835

CEL_HUMAN

Bile-salt-activated lipase precursor (EC 3.1.1.3)

1.00E-133

BX914935.1.p.sc.3

7

Q96NJ5

BKLH5_HUMAN

BTB and kelch domain containing protein 5

2.00E-17

BX915192.1.p.sc.3

7

NONE

NONE

NONE

 

BX916737.1.p.sc.3

7

P51611

HCFC1_MESAU

Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory protein)

6.00E-85

BX665022.1.p.sc.3

6

Q5R7B5

KCRS_PONPY

Creatine kinase, sarcomeric mitochondrial precursor (EC 2.7.3.2)

0

BX665363.1.p.sc.3

6

Q9NST1

ADPN_HUMAN

Adiponutrin (iPLA2-epsilon) [Includes: Triacylglycerol lipase (EC 3.1.1.3)

3.00E-24

BX665415.1.p.sc.3

6

Q13516

OLIG2_HUMAN

Oligodendrocyte transcription factor 2 (Oligo2) (Basic helix-loop-helix protein class B 1)

8.00E-65

BX670113.1.p.sc.3

6

NONE

NONE

NONE

 

BX675854.1.p.sc.3

6

O75376

NCOR1_HUMAN

Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)

7.00E-71

BX667060.1.p.sc.3

5

NONE

NONE

NONE

 

BX914492.1.p.sc.3

5

Q30KL7

DB109_PANTR

Beta-defensin 109 precursor (Defensin, beta 109)

4.00E-27

  1. The 20 deepest contigs containing only Agenae pig ESTs were listed with their Sigenae contig name, depth, Best Swissprot hit, hit accession, hit description and e-value, as annotated in the Sigenae web interface [30].