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Table 6 genes transcriptionally up-regulated by both ripening and cold.

From: Heterologous microarray experiments allow the identification of the early events associated with potato tuber cold sweetening

Probeset ID

Avg. signal 17°C

Avg. signal 4°C

Fold change

Adjusted P. Value

Best potato match

Annotation

Les.1936.1.S1_at

11.58

1990.21

171.51

0.00129

TA27416_4113

Early light inducible protein (Solanum lycopersicum) [64]; TC116636

Les.4223.1.S1_at

4.79

330.56

69.20

0.00189

TA28833_4113

alternative oxidase 1a (Solanum lycopersicum) [64]; TC116692

Les.4829.1.S1_at

14.26

586.14

40.29

0.00189

CV498197

2-oxoglutarate-dependent dioxygenase (Solanum lycopersicum) [64]; TC115851

Les.3338.1.S1_at

7.75

222.86

29.98

0.00300

TA24335_4113

S-adenosyl-L-methionine synthetase 1 (Daucus carota) [105]

Les.220.1.S1_at

8.10

226.46

28.2

0.00182

TA25585_4113

AER (Nicotiana tabacum) [106]

LesAffx.49935.1.S1_at

20.28

510.32

26.62

0.00384

TA28438_4113

Pyruvate decarboxylase (Solanum tuberosum) [64]; TC1163

Les.3551.1.S1_at

17.51

390.08

22.9

0.00255

CV475083

Ethylene-responsive transcriptional coactivator (ER24)(Solanum lycopersicum) [76]

Les.2988.1.S1_at

84.47

1601.26

18.92

0.00182

TA25065_4113

Cinnamic acid 4-hydroxylase (Capsicum annuum) [64]; TC124119

LesAffx.44987.1.S1_at

13.27

222.49

16.76

0.00175

TA38177_4113

Solanesyl diphosphate synthase (Hevea brasiliensis (Para rubber tree) geranyl diphosphate synthase (Arabidopsis thaliana) [64]; TC116882

Les.3651.1.S1_at

108.84

1738.28

16.03

0.00224

TA24332_4113

S-adenosyl-L-methionine synthetase (Nicotiana tabacum) [107]

Les.2560.1.S1_at

7.42

103.61

13.90

0.00226

TA25537_4113

Ethylene-forming enzyme (Solanum lycopersicum) [64]; TC123934

Les.4412.1.A1_at

10.95

133.78

12.10

0.00209

TA26173_4113

Leucoanthocyanidin dioxygenase 2, putative (Arabidopsis thaliana) [108]

Les.5956.1.S1_s_at

130.33

1406.81

10.88

0.00276

TA23754_4113

Cold-stress inducible protein (CI7) (Solanum tuberosum) [64]; TC116013

Les.4150.1.S1_at

173.18

1515.29

8.74

0.00287

TA29480_4113

Mitochondrial small heat-shock protein (Solanum lycopersicum) [64]; TC124001

Les.5826.1.S1_at

136.17

1105.79

8.12

0.00226

TA28749_4113

Cathepsin B-like cysteine proteinase (Solanum tuberosum) [64]; TC124060

LesAffx.1959.1.S1_at

28.53

224.93

7.88

0.00224

TA25003_4113

Glutathione S-transferase. class-phi (Solanum commersonii) [64]; TC116034

LesAffx.47187.1.S1_at

41.05

293.51

7.14

0.00236

TA36088_4113

Universal stress protein/early nodulin ENOD18-like [64]; TC123970

Les.3171.3.S1_a_at

18.56

120.71

6.50

0.00249

TA30735_4113

Phytoene synthase. chloroplast precursor (Capsicum annuum) [64]; TC115970

Les.3813.1.S2_at

142.73

855.96

6.38

0.01985

TA23078_4113

S-adenosylmethionine decarboxylase proenzyme [64]; TC123879

Les.3085.1.S1_at

28.13

178.22

6.28

0.00391

BG888309

Flavonol synthase/flavanone 3-hydroxylase (Solanum tuberosum) [64]; TC116718

Les.3285.1.S1_at

311.71

1908.05

6.13

0.00384

TA27830_4113

Acyl carrier protein (Capsicum chinense) [64]; TC124728

LesAffx.34336.1.S1_at

65.09

382.59

6.12

0.00895

TA46602_4113

70 kD heat-shock protein (Arabidopsis thaliana) [64]; TC126413

Les.4573.1.S1_at

28.35

150.86

5.50

0.00889

TA28898_4113

Guanylate kinase (Nicotiana tabacum) [64]; TC115887

LesAffx.69795.1.S1_at

27.80

148.00

5.32

0.00458

TA37100_4113

Putative methionine sulfoxide reductase B (Oryza sativa) [109]

Les.274.1.S1_at

8.38

29.61

3.53

0.01158

BQ046569

Ripening regulated protein DDTFR10/A (Solanum lycopersicum) [64]; TC116368

Les.824.1.S1_at

64.19

169.95

2.79

0.04315

TA30812_4113

Glucose-6-phosphate 1-dehydrogenase precursor (Solanum tuberosum) [64]; TC116406

Les.2702.1.S1_a_at

7.53

20.97

2.66

0.03637

TA26908_4113

Acid invertase (Solanum tuberosum) [64]; TC123895

Les.205.1.S1_at

174.85

461.58

2.64

0.00847

TA24762_4113

14-3-3 protein (Solanum tuberosum) [64]; TC116260

Les.2992.1.S1_a_at

87.62

225.46

2.58

0.01367

BQ504492

Callus-expressing factor (Nicotiana tabacum) JERF3; [99]

Les.3933.1.S1_at

1933.65

4519.78

2.33

0.00978

TA24146_4113

Adenosylhomocysteinase (Solanum lycopersicum) [64]; TC116044

LesAffx.10807.1.S1_at

18.17

35.73

1.96

0.01649

TA28665_4113

Heat-shock cognate 70 kDa protein (Petunia hybrida) [64]; TC126297

LesAffx.32723.1.S1_at

40.30

68.27

1.69

0.03380

TA26759_4113

BZIP transcription factor ATB2 (Glycine max) [64]; TC124112

Les.283.1.S1_at

138.53

228.92

1.65

0.03786

CV477421

Induced stolon tip protein (Capsicum annuum) [64]; TC124196

Les.303.1.S1_at

5852.89

9264.98

1.57

0.04951

TA24257_4113

Enolase (Solanum lycopersicum) [64]; TC123931

  1. Selected entries from a set of genes, which are transcriptionally up-regulated by both ripening (various databases as indicated) and cold (our GeneChip dataset). TED database [64] refers to a recent list of tomato ripening-up-regulated genes (transition from mature green to breaker stage) and the ID of the corresponding tomato Tentative Consensus (TC) entry is reported. Fold changes represent the ratios of stress to control average signals (two biological replicates for both control and stress conditions). Further details are as described in Table 2.