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Table 2 Relative abundance of differentially expressed microRNAs

From: Deep Sequencing of Chicken microRNAs

microRNA name

Length

Sequence

# Reads in MDV infected CEF

# Reads in uninfected CEF

Ratio Infected/Uninfected (Normalized)

gga-miR-29b

23

TAGCACCATTTGAAATCAGTGTT

64

2

18.8

gga-miR-196

21

TAGGTAGTTTCATGTTGTTGG

23

1

13.5

gga-miR-133a

22

TTGGTCCCCTTCAACCAGCTGT

15

2

4.4

gga-miR-10b

22

TACCCTGTAGAACCGAATTTGT

70

15

2.7

gga-miR-30d

22

TGTAAACATCCCCGACTGGAAG

23

6

2.3

gga-let-7f

22

TGAGGTAGTAGATTGTATAGTT

338

454

0.4

gga-let-7b

22

TGAGGTAGTAGGTTGTGTGGTT

74

105

0.4

gga-miR-130a

22

CAGTGCAATATTAAAAGGGCAT

18

28

0.4

gga-let-7a

22

TGAGGTAGTAGGTTGTATAGTT

383

603

0.4

gga-miR-1a

21

TGGAATGTAAAGAAGTATGTA

7

12

0.3

  1. Data shown are microRNAs with more than 15 reads in one library and 2-fold difference in read count, after scaling for total number of reads matching the chicken genome in each library.