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Table 2 Comparison in terms of cancer functional categories.

From: A statistical framework for consolidating "sibling" probe sets for Affymetrix GeneChip data

 

PerGene

PerPS

customCDF-UniGene

customCDF-ensEMBLgene

Apoptosis

0.07567058

0.648036408

NA

NA

Cell Growth

0.091233514

0.219401388

NA

NA

Cell Differentiation

0.000731174

0.918393769

NA

NA

Cell Adhesion

0.000642603

0.078656064

0.042166

NA

Blood Vessel Development

0.004064254

NA

NA

NA

  1. Comparison of the per-gene approach, the per-probeset approach, the UniGene custom CDF approach, and the ensEMBL gene custom CDF approach in terms of enrichment of informative GO terms.