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Table 2 Optimality of the derived repeat libraries. Deriving a repeat library from the reference clustering of each data set, we can measure the effectiveness of the library by comparing the reclustering of the masked sequences to the reference clustering. The values are given as the average score for each species ± the standard deviation.

From: Repeats and EST analysis for new organisms

 

VI

Jaccard

zebrafish

0.290 ± 0.01

0.85 ± 0.08

medaka

0.194 ± 0.01

0.85 ± 0.04