Table 2 Excerpt from oligonucleotide frequency table for 5'-UTRs of 11,315 human genes and two SRI-generated counterparts. The entire dataset is presented in Additional file 1.
From: Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures
Oligonucleotide | Human 5'-UTRs | Random 1 SRI-generated | Random 2 SRI-generated |
|---|---|---|---|
A | 0.203 | 0.203 | 0.203 |
T | 0.201 | 0.201 | 0.2 |
C | 0.292 | 0.294 | 0.293 |
G | 0.303 | 0.303 | 0.303 |
AA | 0.0506 | 0.0503 | 0.0506 |
AT | 0.0323 | 0.0323 | 0.0318 |
AC | 0.0438 | 0.0437 | 0.0438 |
AG | 0.0771 | 0.0767 | 0.077 |
TA | 0.0258 | 0.0257 | 0.0256 |
TT | 0.0511 | 0.051 | 0.0508 |
TC | 0.0593 | 0.0591 | 0.0588 |
TG | 0.0653 | 0.0651 | 0.0651 |
CA | 0.0608 | 0.0609 | 0.0608 |
CT | 0.0726 | 0.0726 | 0.0725 |
CC | 0.0965 | 0.0973 | 0.0968 |
CG | 0.0627 | 0.0627 | 0.0629 |
GA | 0.0658 | 0.0661 | 0.0662 |
GT | 0.0453 | 0.045 | 0.0452 |
GC | 0.0932 | 0.0934 | 0.0936 |
GG | 0.0977 | 0.098 | 0.0984 |
... | ... | ... | ... |
ACAA | 0.002558 | 0.002507 | 0.002544 |
ACAT | 0.002046 | 0.00205 | 0.002057 |
ACAC | 0.002775 | 0.002731 | 0.0028 |
ACAG | 0.004442 | 0.004362 | 0.00442 |
ACTA | 0.001396 | 0.001362 | 0.001388 |
ACTT | 0.002893 | 0.002899 | 0.002881 |
ACTC | 0.003028 | 0.002958 | 0.003063 |
ACTG | 0.003961 | 0.003912 | 0.003954 |
... | ... | ... | ... |