Table 3 Conserved motif counts and motif processing
From: A Caenorhabditis motif compendium for studying transcriptional gene regulation
Conserved Motif counts | |||
|---|---|---|---|
Processing step | Kmer | GEMODA | FootPrinter |
Initial candidates | 404,546 | 256,688 | 41,747 |
Degeneracy optimization | 193,491 | 82,672 | 24,247 |
Z-score and P-value | 4,442 | 5,477 | 5,312 |
Expression data filter | Condition dependent (< 1,000) | ||