Table 4 Polymorphisms detected among E. grandis cDNA sequences.
From: High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
Variant type | Number of variants | Number of contigs containing SNPs |
|---|---|---|
Indel | 821 | 704 |
Involving two or more nucleotides | 635 | 537 |
Total SNPs | 28,652 | 9,942 |
   Lower confidence SNPs (freq rare allele <10%) | 4,910 | 1,089 |
Transition | 4,239 | 1,005 |
Transversion | 671 | 405 |
   Higher confidence SNPs (freq rare allele ≥ 10%) | 23,742 | 9,845 |
Transition | 17,871 | 8,394 |
Transversion | 5,871 | 3,881 |
TOTAL | 30,108 | 10,223 |