High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

BMC Genomics

Table 8 GO categories enriched among conserved and diverse genes of E. grandis.

β_N extreme^a	GO category	Proportion out extreme	Proportion in extreme	p-value
"conserved"	malate metabolic process	0.0007	0.0093	0.0056
"conserved"	ubiquitin-dependent protein catabolic process	0.0131	0.0278	0.0314
"diverse"	defense response	0.0070	0.0302	0.0069
"diverse"	biological_process_unknown	0.1647	0.2362	0.0134
"diverse"	response to biotic stimulus	0.0032	0.0151	0.0480

^a The "conserved" tail is composed of contigs with β_N smaller than 1.0 × 10^-3, while the "diverse" tail has contigs with β_N greater than 3.5 × 10^-3.
Biological process GO categories enriched (p-value < 0.05) in each of the two extremes of β_N (non-synonymous nucleotide diversity) distribution.

ISSN: 1471-2164