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Table 1 Number and percentage of probes overlapping 1, 2 or 3 SNP loci for each test strain

From: Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays

244 k whole genome probe set

1 SNP (% of probes in set)

2 SNP (% of probes in set)

3 SNP (% of probes in set)

A/J v C57BL/6J

7782 (3.30)

779 (0.33)

35 (0.01)

BALB/cJ v C57BL/6J

7170 (3.04)

708 (0.30)

43 (0.01)

129P3/J v C57BL/6J

7967 (3.38)

864 (0.36)

41 (0.01)

Any v C57BL/6J

13683 (5.81)

1526 (0.64)

77 (0.03)

56 k custom probe set

   

A/J v C57BL/6J

1343 (2.51)

120 (0.22)

5 (0.01)

BALB/cJ v C57BL/6J

1834 (3.43)

178 (0.33)

8 (0.01)

129P3/J v C57BL/6J

2273 (4.25)

233 (0.44)

11 (0.02)

Any v C57BL/6J

3415 (6.38)

352 (0.65)

16 (0.02)