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Table 2 Direct hypothesis category of yeast genes shown by microarray analysis to be affected by berenil treatment

From: Microarray analysis of the in vivo sequence preferences of a minor groove binding drug

ORF

Gene

Ratio

Function

Process

YBR233W-A

DAD3

-3.45

mitosis

protein binding activity

Q0130

OLI1

-2.75

ATP synthase activity

ATP synthesis coupled proton transport

YDR070C

FMP16

-2.43

unknown

unknown

YEL039C

CYC7

-2.41

electron transport

electron carrier activity

YLR327C

TMA10

-2.35

unknown

unknown

YJL156W-A

YJL156W-A

-2.25

unknown

unknown

YMR105C

PGM2

-2.23

glucose 1-phosphate utilization

phosphoglucomutase activity

YGR248W

SOL4

-2.00

unknown

unknown

YHR087W

YHR087W

-1.95

unknown

unknown

YPR160W

GPH1

-1.76

glycogen catabolism

glycogen phosphorylase activity

YLR178C

TFS1

-1.76

regulation of proteolysis

lipid binding activity

YOR173W

DCS2

-1.72

unknown

unknown

YEL011W

GLC3

-1.66

glycogen metabolism

1,4-alpha-glucan branching enzyme activity

YMR081C

ISF1

-1.64

aerobic respiration

unknown

YER150W

SPI1

-1.51

unknown

unknown

YER067W

YER067W

-1.50

unknown

unknown

YOR031W

CRS5

-1.45

response to metal ion

copper ion binding activity

YIL136W

OM45

-1.43

unknown

unknown

YPL230W

YPL230W

-1.41

unknown

unknown

YOR178C

GAC1

-1.38

meiosis

protein phosphatase type 1 activity

YFR053C

HXK1

-1.35

fructose metabolism

hexokinase activity

YOR120W

GCY1

-1.33

salinity response

aldo-keto reductase activity

YFR017C

YFR017C

-1.32

unknown

unknown

YOR374W

ALD4

-1.31

ethanol metabolism

aldehyde dehydrogenase (NAD+) activity

YJR096W

YJR096W

-1.29

arabinose metabolism

oxidoreductase activity

YFR015C

GSY1

-1.27

glycogen metabolism

glycogen (starch) synthase activity

YDR453C

TSA2

-1.22

regulation of redox homeostasis

thioredoxin peroxidase activity

YHL021C

FMP12

-1.21

unknown

unknown

YKL151C

YKL151C

-1.15

unknown

unknown

YGR008C

STF2

-1.14

ATP synthesis

unknown

YDL130W-A

STF1

-1.09

ATP synthesis

unknown

YCL042W

YCL042W

-1.08

unknown

unknown

YOR385W

YOR385W

-1.07

unknown

unknown

YIL045W

PIG2

-1.07

unknown

protein phosphatase regulator activity

YLR258W

GSY2

-1.06

glycogen metabolism

glycogen (starch) synthase activity

YMR173W

DDR48

-1.04

DNA repair

unknown

YNL015W

PBI2

-1.03

vacuole fusion (non-autophagic)

endopeptidase inhibitor activity

YCL040W

GLK1

-1.02

carbohydrate metabolism

glucokinase activity

YAR071W

PHO11

1.02

phosphate metabolism

acid phosphatase activity

YKL099C

UTP11

1.18

processing of 20S pre-rRNA

snoRNA binding activity

  1. Genes hypothesized to be directly affected by berenil treatment are listed with their expression ratios (log2 transformed treated to untreated) and functions, if known.