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Figure 1 | BMC Genomics

Figure 1

From: PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals

Figure 1

Results when searching for the yeast EST2 gene. The top of this page provides information pertaining to a specific gene (S. cerevisiae EST2), its genome database (SGD) entry, a link to perform BLAST searches for similar genes, MFE minima graph, and a link to download its sequence. Following this information is a list showing the locations of the translational start site, potential slippery sites and the number of secondary structure solutions that have been computed for them, and the 0-frame termination codon. At the bottom is a display of the gene where the ATG start site is displayed in green, slippery sites are shown in blue, and -1 frame termination codons are shown in orange. The specific entry for each potential frameshift signal may be viewed by clicking on the slippery site's position or its link in the sequence. In addition, locations of human single nucleotide polymorphisms catalogued in the NCBI Single Nucleotide Polymorphism Databaseare rendered in maroon, and clicking on these will open links to the database http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/SNP/.

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