Skip to main content

Table 3 GO annotation based on the Biological Process ontology for growth rate dependent genes

From: Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design

GO Term

Gene hits

Cluster frequency

P-value

Up-regulated Genes (114)

   

cellular biosynthetic process

61

53.5%

1.58E-21

translation

51

44.7%

8.27E-21

biosynthetic process

66

57.9%

1.61E-20

macromolecule biosynthetic process

55

48.2%

4.28E-19

cellular protein metabolic process

59

51.8%

3.95E-11

protein metabolic process

60

52.6%

4.11E-11

cellular macromolecule metabolic process

60

52.6%

4.78E-11

primary metabolic process

90

78.9%

7.37E-11

gene expression

62

54.4%

1.29E-10

cellular metabolic process

91

79.8%

4.39E-10

metabolic process

92

80.7%

9.58E-10

cellular process

101

88.6%

8.12E-07

macromolecule metabolic process

77

67.5%

8.86E-07

ribosome biogenesis and assembly

21

18.4%

4.20E-04

ribosomal subunit assembly

8

7.0%

6.90E-04

ribosome assembly

8

7.0%

2.82E-03

ribonucleoprotein complex biogenesis and assembly

21

18.4%

5.59E-03

Down-regulated Genes (154)

   

cellular carbohydrate metabolic process

18

11.8%

2.90E-04

carbohydrate metabolic process

18

11.8%

1.14E-03

macromolecule catabolic process

22

14.4%

1.86E-03

response to stress

26

17.0%

6.33E-03

catabolic process

24

15.7%

9.30E-03

energy reserve metabolic process

7

4.6%

9.34E-03

  1. Gene hits indicate the number of genes in the clusters of up-/down-regulated genes belonging to that particular GO term; the value is also given as percentage (cluster frequency). P-values are provided as a score of significance (cut-off ≤ 0.01).