A. | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Locus name (origin) | MARINER_HC (Hyalophora cecropia) | MARI_BM (Bombyx mori) | GYPSY70-I_AG (Anopheles gambiae) | Sake_BM (Bombyx mori) | DOC5_DM (D. melanogaster) | G4_DM (D. melanogaster) | ZENON_BM (Bombyx mori) | Â | Â | Â | Â | |||||||
Element Family | Mariner | Mariner | Gypsy | Daphne | Jockey | Jockey | CR1 | Â | Â | Â | Â | |||||||
Element type | DNA transposon | DNA transposon | LTR retroposon | LTR retroposon | Non-LTR retroposon | Non-LTR retroposon | Non-LTR retroposon | Â | Â | Â | Â | |||||||
Described length | 1255 | 1310 | 4858 | 5140 | 2791 | 3856 | 2599 | Â | Â | Â | Â | |||||||
 | era | mel | era | mel | era | mel | era | mel | era | mel | era | mel | era | mel |  |  |  |  |
# regions masked | 3 | NA | 3 | NA | NA | 1 | 2 | 1 | 5 | NA | 1 | NA | 5 | 1 | Â | Â | Â | Â |
Avg length of masked region (+/- Std.Dev.) | 85.33 (51.03) | NA | 159.33 (28.11) | NA | NA | 2062 | 253 (173.95) | 73 | 440 (275.77) | NA | 1243 | NA | 520.8 (618.74) | 44 | Â | Â | Â | Â |
Min length of masked region | 46 | NA | 127 | NA | NA | NA | 46 | NA | 245 | NA | NA | NA | 94 | NA | Â | Â | Â | Â |
Max length of masked region | 143 | NA | 178 | NA | NA | NA | 143 | NA | 635 | NA | NA | NA | 1574 | NA | Â | Â | Â | Â |
Total nucleotide masked | 256 | NA | 478 | NA | NA | 2062 | 256 | 73 | 880 | NA | 1243 | NA | 2604 | 44 | Â | Â | Â | Â |
Proportion of BACs masked | 0.07% | NA | 0.14% | NA | NA | 1.05% | 0.07% | 0.04% | 0.25% | NA | 0.35% | NA | 0.74% | 0.02% | Â | Â | Â | Â |
B. | ||||||||||||||||||
Core Motif | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 8 | |||||||||
 | era | mel | era | mel | era | mel | era | mel | era | mel | era | mel | era | mel | era | mel | era | mel |
Length of core motif | 469 | NA | 460 | 598 | 428 | NA | 384 | NA | 314 | NA | 259 | NA | 266 | NA* | 147 | NA | NA | 306 |
# regions masked | 16 | 2 | 7 | 11 | 29 | 1 | 5 | NA | 11 | NA | 17 | 4 | 310 | 129 | 40 | 9 | NA | 10 |
Mean length of masked region (Std.Dev.) | 225. (121.71) | 70.5 (16.26) | 415 (118.3) | 406.27 (302.12) | 166.69 (127.26) | 119 (NA) | 341.8 (100.7) | NA | 189.36 (90.64) | NA | 125.59 (92.66) | 76.75 (38.87) | 155.25 (70.85) | 129.95 (64.26) | 89.1 (27.99) | 80.11 (21.98) | NA | 244.1 (96.74) |
Minimum length of masked region | 69 | 59 | 147 | 29 | 37 | NA | 162 | NA | 38 | NA | 28 | 55 | 38 | 40 | 38 | 55 | NA | 46 |
Maximum length of masked region | 439 | 82 | 470 | 740 | 449 | NA | 394 | NA | 314 | NA | 272 | 135 | 287 | 280 | 148 | 116 | NA | 314 |
Total nucleotide masked | 3603 | 141 | 2905 | 4469 | 4834 | 119 | 1709 | NA | 2083 | NA | 2135 | 307 | 48126 | 16763 | 3564 | 721 | NA | 2441 |
Amount of BACs masked | 1.0% | 0.1% | 0.8% | 2.3% | 1.4% | 0.1% | 0.5% | NA | 0.6% | NA | 0.6% | 0.2% | 13.6% | 8.5% | 1.0% | 0.4% | NA | 1.2% |