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Table 1 Activity of promoters with various combinations of supporting evidence

From: Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array

Evidence

CpG-related

Number of promoters

Number of active promoters

Percentage

KnownGene

Yes

28

2

7.10%

 

No

792

84

10.60%

CAGE

Yes

616

38

6.20%

 

No

18286

2533

13.90%

FirstEF

Yes

129

26

20.20%

 

No

184

48

26.10%

KnownGene, CAGE

Yes

93

9

9.70%

 

No

910

81

8.90%

KnownGene, FirstEF

Yes

63

25

39.70%

 

No

45

10

22.20%

CAGE, FirstEF

Yes

1123

440

39.20%

 

No

541

87

16.10%

KnownGene, CAGE, FirstEF

Yes

3202

2170

67.80%

 

No

154

60

39.00%