Table 6 Eight candidate genes with cis eQTL in the region of drip loss QTL of SSC2, 3, 4 and 6 and trait correlated expression
| Â | eQTL | trait correlated expression | Â | ||||
|---|---|---|---|---|---|---|---|
Probe_Set_ID | SSC | POS [cM] | F | r | p-value | q-value | gene name (symbol) |
Ssc.16645.1.S1_at | 2 | 20 | 18.2 | 0.53 | <.0001 | 9.44E-05 | AHNAK nucleoprotein (AHNAK) |
Ssc.2330.1.S1_at | 2 | 35 | 6.5 | -0.43 | <.0001 | 8.77E-04 | solute carrier family 3 (SLC3A2) |
Ssc_3574_1_A1_at | 3 | 0 | 9.4 | 0.56 | <.0001 | 9.44E-05 | mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) |
Ssc_10360_1_S1_at | 3 | 0 | 5.1 | 0.51 | <.0001 | 9.44E-05 | hypothetical protein (LOC162073) |
Ssc.20772.1.S1_at | 3 | 37 | 5.2 | -0.49 | <.0001 | 1.03E-04 | ubiquitin specific peptidase 39 (USP39) |
Ssc_12110_1_S1_at | 4 | 66 | 7.0 | -0.58 | <.0001 | 1.03E-04 | papillary renal cell carcinoma (PRCC) |
Ssc_5334_1_S1_at | 6 | 42 | 7.5 | -0.47 | <.0001 | 1.03E-04 | coenzyme Q9 homolog (CoQ9) |
Ssc_4843_1_A1_at | 6 | 46 | 5.1 | 0.45 | <.0001 | 9.44E-05 | Bardet-Biedl syndrome 2 (BBS2) |