Skip to main content

Table 3 Repetitive DNA in Citrus clementina BESs identified by Repeat Masker

From: Development of genomic resources for Citrus clementina: Characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences

 

Number of elements

Length (bp)

Sequence (%)

Number of elements (%)

Retroelements

    

   LINEs

    

L1/CIN4

360

67,719

0.237%

3.74%

   LTR elements

    

Ty1/Copia

3,770

1,142,096

3.999%

39.20%

Gypsy/DIRS1

3,917

1,172,005

4.103%

40.73%

   Other

265

6,939

0.024%

2.76%

   Total Retroelements

8,312

2,388,759

8.363%

86.42%

DNA transposons

    

   hobo-Activator

346

64,065

0.224%

3.60%

   Tc1-IS630-Pogo

97

10,162

0.036%

1.01%

   En-Spm

381

55,814

0.195%

3.96%

   MuDR-IS905

386

29,983

0.105%

4.01%

   Tourist/Harbinger

13

1,400

0.005%

0.14%

   Other

83

5,653

0.020%

0.86%

   Total DNA transposons

1,306

167,077

0.585%

13.58%

Total interspersed repeats

9,618

2,555,836

8.948%

Â