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Table 1 The potential CCCH motifs.

From: Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice

Group

Arabidopsis

Rice

  

Predicted by Perl

After examining by Pfam/SMART

Predicted by Perl

After examining by Pfam/SMART

A

C-X4-C-X5-C-X3Hb

3

2

6

0

B

C-X5-C-X4-C-X3Hb

12

12

14

9

C

C-X6-C-X4-C-X3H

6

0

15

0

D

C-X6-C-X5-C-X3H

9

0

26

0

E

C-X7-C-X4-C-X3H

18

5

17

6

F

C-X7-C-X5-C-X3H

43

42

66

35

G

C-X7-C-X6-C-X3Hb

5

1

11

1

H

C-X8-C-X4-C-X3H

10

2

19

1

I

C-X8-C-X5-C-X3H

46

44

56

36

J

C-X8-C-X6-C-X3Hb

6

1

11

0

K

C-X9-C-X4-C-X3H

9

0

410a

0

L

C-X9-C-X5-C-X3H

11

4

14

6

M

C-X10-C-X4-C-X3H

9

0

24

0

N

C-X10-C-X5-C-X3H

13

1

9

3

O

C-X11-C-X4-C-X3H

10

0

12

0

P

C-X11-C-X5-C-X3H

7

1

8

1

Q

C-X12-C-X4-C-X3H

29

0

9

0

R

C-X12-C-X5-C-X3H

9

0

7

0

S

C-X13-C-X4-C-X3H

5

0

8

0

T

C-X13-C-X5-C-X3H

17

0

28

0

U

C-X14-C-X4-C-X3H

4

0

8

0

V

C-X14-C-X5-C-X3H

12

0

4

0

W

C-X15-C-X5-C-X3Hb

   

1

  1. a The proteins containing the catalytic triad Cys-His-Asn domain.
  2. b The CCCH motifs that were not referred in the studies of Berg et al. [21].