Table 3 The Frankia-specific core secretome
From: Comparative secretome analysis suggests low plant cell wall degrading capacity in Frankia symbionts
| Â | Â | CcI3 gi | ACN gi | EAN gi |
|---|---|---|---|---|
Cell wall/growth | Lytic transglycosylase, catalytic | 86742160†| 111225025 | 158313119 |
| Â | OmpA/MotB | 86739073 | 111220228 | 158318192 |
| Â | Peptidoglycan-binding domain 1 | 86741674 | 111224313 | 158314338 |
| Â | Putative lipoprotein | 86742138 | 111224994 | 158313137 |
| Â | Septum formation initiator | 86742601 | 111225576 | 158312664 |
| Â | Transglycosylase-like | 86742920 | 111225850 | 158318320 |
Hydrolase | Hypothetical protein; putative glycosidase | 86742141 | 111222591 | 158317255 |
|  | Poly(3-hydroxybutyrate) depolymerase-like | 86739947 | 111221400†| 158314094 |
|  | Poly(3-hydroxybutyrate) depolymerase-like | 86738795 | 111219601†| 158318953 |
|  | Putative signal peptide; putative peptidase domain | 86742587†| 111225562 | 158312677 |
Metabolism | GCN5-related N-acetyltransferase | 86743083 | 111226044†| 158312032 |
| Â | K+ transporting ATPase, KdpC subunit | 86741971 | 111224671 | 158312459 |
|  | Lipopolysaccharide biosynthesis | 86742615 | 111225592 | 158312648†|
| Â | Peptidyl-prolyl cis-trans isomerase, cyclophilin type | 86740087 | 111221586 | 158316890 |
| Â | Poly-gamma-glutamate biosynthesis protein | 86738783 | 111219578 | 158318982 |
| Â | Stage II sporulation E | 86739884 | 111221318 | 158317049 |
|  | UvrD/REP helicase | 86743179 | 111224714 | 158313386†|
Regulation | Protein serine/threonine phosphatases | 86743061 | 111226019 | 158312053 |
|  | Protein-tyrosine kinase | 86742154 | 111225020 | 158313124†|
Solute-binding | ABC-type branched-chain amino acid transport, periplasmic | 86742125 | 111224977 | 158317330 |
| Â | Extracellular ligand-binding receptor | 86741514 | 111223750 | 158314112 |
| Â | Extracellular solute-binding protein, family 1 | 86739179 | 111220428 | 158317895 |
| Â | TRAP-type uncharacterized transport system, periplasmic | 86739077 | 111220233 | 158318181 |
Hypothetical | Allergen V5/Tpx-1 related | 86743037 | 111225986 | 158312084†|
|  | Hypothetical protein Francci3_0037 | 86738760†| 111219542 | 158319012 |
| Â | Hypothetical protein Francci3_0040 | 86738763 | 111219548 | 158319008 |
|  | Hypothetical protein Francci3_0066 | 86738789 | 111219591†| 158318965 |
| Â | Hypothetical protein Francci3_0077 | 86738800 | 111219607 | 158318948 |
| Â | Hypothetical protein Francci3_0189 | 86738909 | 111224111 | 158318981 |
|  | Hypothetical protein Francci3_0265 | 86738982 | 111220095 | 158318303†|
| Â | Hypothetical protein Francci3_0293 | 86739009 | 111220142 | 158318253 |
|  | Hypothetical protein Francci3_0740 | 86739453†| 111220717 | 158317614 |
|  | Hypothetical protein Francci3_0760 | 86739473 | 111220756†| 158317589 |
|  | Hypothetical protein Francci3_0772 | 86739485 | 111220768 | 158317577†|
| Â | Hypothetical protein Francci3_0777 | 86739490 | 111220773 | 158317572 |
| Â | Hypothetical protein Francci3_0789 | 86739502 | 111220806 | 158317543 |
|  | Hypothetical protein Francci3_1158 | 86739866†| 111221294 | 158317064 |
|  | Hypothetical protein Francci3_1658 | 86740363 | 111223957 | 158313918†|
| Â | Hypothetical protein Francci3_2782 | 86741470 | 111223676 | 158314336 |
| Â | Hypothetical protein Francci3_3087 | 86741773 | 111224471 | 158313666 |
|  | Hypothetical protein Francci3_3155 | 86741841†| 111224558 | 158313592 |
|  | Hypothetical protein Francci3_3200 | 86741886†| 111224609 | 158313544 |
| Â | Hypothetical protein Francci3_3489 | 86742171 | 111225037 | 158313108 |
|  | Hypothetical protein Francci3_3886 | 86742565†| 111225535 | 158312696 |
|  | Hypothetical protein Francci3_3888 | 86742567 | 111225539 | 158312694†|
|  | Hypothetical protein Francci3_4257 | 86742932 | 111225862 | 158312224†|
|  | Hypothetical protein Francci3_4291 | 86742966 | 111225895†| 158312188 |
|  | Hypothetical protein Francci3_4326 | 86743001†| 111225939 | 158312147 |
| Â | Hypothetical protein Francci3_4510 | 86743185 | 111226172 | 158319016 |
| Â | Kelch repeat protein | 86738890 | 111219845 | 158313864 |
| Â | Protein of unknown function DUF37 | 86743221 | 111226215 | 158319056 |
|  | Protein of unknown function DUF459 | 86742591†| 111225566 | 158312673 |
|  | †Not predicted to contain a signal peptide by SignalP or TATFIND 1.4 | |||