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Table 3 Novel human miRNA sequences identified by cloning from NB

From: New miRNAs cloned from neuroblastoma

Sequence name

Sequence

Chromosomal location

Northern blot validation

Reads

Notes

MYCNAMP_NB2_5

aaggagcttacaatctagctggg

11q14.1

+

1

predicted gene

MYCNSC_NB2_148

acccagcaccccaggtttccacag

12q13.12

-

1

Tubulin-K-alpha-1

MYCNSC_NB5_330

taggacacatggtctacttct

14q32.31

+

1

within miRNA cluster

MYCNAMP_NB2_61

tcaaaactgaggggcattttct

19q13.42

+

4

within miRNA cluster

MYCNAMP_NB4_70

cctgtgttttgttggtagcctgtgttac

2q14.1

-

1

DPP10

MYCNSC_NB8_202

ccagacagaattctatgcactttc

3p12.3

-

1

KIAA0664

MYCNSC_NB5_41

tcaccccataaacacca

3p13

+

1

Extragenic

MYCNSC_NB5_281

tccattacactaccctgcctct

3p25.3

-

1

Plasma membrane calcium ATPase isoform 2

KELLY_276

tcgattcccacccctgacacca

4q13.1

+

1

Extragenic

MYCNSC_NB3_226

ctgccctggcccgagggaccga

5q31.2

-

1

Kelch-like-3

CONTIG_CHR_9

tgcaggaacttgtgagtctcc

9p21.1

+

4

Extragenic

MYCNSC_NB5_318

tggatttctttgtgaatca

9p21.1

+

1

Extragenic

MYCNAMP_NB2_241

cagggaggtgaatgtgat

Xq21.2

-

1

Extragenic

MYCNSC_NB5_64

aagctaattttttgaggcc

15q22.31

NA

1

U5 predicted, borderline case

MYCNSC_NB2_237

gatgatgctgctgatgctg

8p23.1

+

1

Pin2-interacting protein X1

  1. Notes include the information about genomic locations and additional sequence information.