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Table 4 Summary of the performance of each algorithm using CGH microarray data for the MG1655 sequenced strain. The sensitivity, specificity, and M-score generated from each of the cut-off algorithms from the CGH data were summarized for comparison.

From: A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes

Algorithm

M-Score

Sensitivity

Specificity

Naive Cut-off (0.25)

99.12

99.07

99.31

Mixture Model (Bimodal)

99.07

99.23

98.63

MKD

98.99

98.93

99.18

Porwollik

98.75

98.37

99.86

GENCOM

98.45

97.99

99.79

GACK EPP = 0

98.43

97.97

99.79

  1. * Institute of Food Research method (GENCOM)
  2. ** Genotyping Analysis by Charlie Kim method (GACK)
  3. *** Minimum Kernel Density method (MKD)