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Table 5 Summary of the performance of each algorithm using CGH microarray data for the EDL933 sequenced strain. The sensitivity, specificity, and M-score generated from each of the cut-off algorithms from the CGH data were summarized for comparison.

From: A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes

Algorithm

M-Score

Sensitivity

Specificity

Naive Cut-off (0.25)

98.89

99.49

92.59

Mixture Model (trimodal)

98.86

99.27

94.59

MKD***

98.84

99.28

94.18

Porwollik

98.60

98.91

95.39

GACK** EPP = 0

98.75

99.08

95.19

GENCOM*

98.09

98.31

95.79

  1. * Institute of Food Research method (GENCOM)
  2. ** Genotyping Analysis by Charlie Kim method (GACK)
  3. *** Minimum Kernel Density method (MKD)