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Table 6 Summary of the performance of each algorithm using CGH microarray data for the Sakai sequenced strain. The sensitivity, specificity, and M-score generated from each of the cut-off algorithms from the CGH data were summarized for comparison

From: A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes

Algorithm

M-Score

Sensitivity

Specificity

Naive Cut-off (0.20)

99.48

99.66

97.13

MKD***

99.39

99.45

98.80

Mixture Model (trimodal)

99.39

99.44

98.80

Porwollik

99.13

99.07

98.76

GACK** EPP = 0

98.85

98.78

99.76

GENCOM*

98.43

98.34

99.52

  1. * Institute of Food Research method (GENCOM)
  2. ** Genotyping Analysis by Charlie Kim method (GACK)
  3. *** Minimum Kernel Density method (MKD)