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Table 3 Comparison between direct BLASTing of 26 bp chickpea tags and sequence homology search through M. truncatula ESTs

From: SuperSAGE: the drought stress-responsive transcriptome of chickpea roots

Process

In silico tags direct BLAST (I)

EST-bridged BLAST (II)

EST-bridged BLAST (III)

Screened databases

NCBI nr Fabaceae mRNAs

NCBI M. truncatula ESTs

TIGR M. truncatula GI ESTs

Number of BLASTed in silico chickpea tags

3544

3544

3544

Total high homology hits

998

632

630

Non-anonymous hits

253

369

213

Common hits with NCBI Fabaceae direct BLAST

-

114

86

Direct ID-correlated common hits

-

48

37

Protein name-correlated hits

-

42

23

RNA description-correlated hits

-

15

17

Non-correlated hits

-

9

9