Table 7 Comparison between SuperSAGE expression profiles and macroarray-generated data

ADP-glucose pyrophosphorylase precursor

ADP-glucose pyrophosphorylase small subunit CagpS1

ADP-ribosylation factor 1-like protein

ADP-ribosylation factor-like protein

AP2/EREBP transcription factor ERF-1

ATP-dependent Clp protease ATP-binding subunit clpC homolog

Chaperonin 21 precursor

Cytochrome P450

Cytochrome P450 73 cinnamic acid 4-hydroxylase

Cytosolic chaperonin, delta-subunit

Dehydration-responsive element binding protein

Dehydrin-cognate

DREB-like protein

(RING zinc finger protein, putative, expressed)

Fiber protein Fb22 (Fragment)

Fiber protein Fb27

Fiber protein Fb4 (Fragment)

Glyceraldehyde 3-phosphate dehydrogenase, cytosolic

Histone H2A

Kinesin (centromere protein)-like heavy chain-like protein

Lipoxygenase

Metallothionein-like protein 1; MT-1

PGM; Glucose phosphomutase

Polygalacturonase inhibiting protein

Protein kinase

Protein phosphatase-2C

RING/C3HC4/PHD zinc finger-like protein

Root-specific metal transporter

S-adenosylmethionine synthase

S-adenosylmethionine synthetase

Similarity to zinc metalloproteinase

Translation initiation factor 5A

Trehalose-6-phosphate phosphatase

Zinc finger (C3HC4-type RING finger)protein-like

Zinc finger (CCCH-type) protein-like

Zinc finger protein 5, ZFP5

Zinc finger-like

ADP-glucose pyrophosphorylase precursor

ADP-glucose pyrophosphorylase small subunit CagpS1

AP2/EREBP transcription factor ERF-2

ATP-dependent Clp protease ATP-binding subunit clpC homolog

Beta-amylase; 1,4-alpha-D-glucan maltohydrolase

Central motor kinesin 1

Cinnamoyl CoA reductase

Cytochrome P450

Cytochrome P450 73 cinnamic acid 4-hydroxylase

Eukaryotic translation initiation factor 5A isoform II

Eukaryotic translation initiation factor 5A-2; eIF-5A-2

Fiber protein Fb19 (Fragment)

Glyceraldehyde 3-phosphate dehydrogenase, cytosolic

Glyceraldehyde-3-phosphate-dehydrogenase

Histone H2A.6

Lipoxygenase (EC 1.13.11.12)

Metallothionein-like protein 1; MT-1

Metallothionein-like protein 2; MT-2

Nine-cis-epoxycarotenoid dioxygenase1

Nodule-enhanced protein phosphatase type 2C

P-type H+-ATPase

PGM; Glucose phosphomutase

Plasma membrane H+-ATPase

Prolyl 4-hydroxylase alpha subunit-like protein

Protein kinase

Protein phosphatase 2C

Protein phosphatase 2C-like protein (AT4g31860/F11C18)

Protein phosphatase-2C

Putative metallophosphatase

S-adenosylmethionine synthetase

Translation initiation factor 5A

Ubiquitin conjugating protein

Vacuolar assembly protein VPS41 homolog

Zinc finger (CCCH-type) protein-like

Zinc finger protein-like

Zinc finger protein-like

Zinc finger protein-like

ADP-glucose pyrophosphorylase precursor

ADP-ribosylation factor 1-like protein

Apyrase-like protein

Chloroplast chaperonin 21

Cysteine proteinase

Cytochrome P450

Cytochrome P450 73 cinnamic acid 4-hydroxylase

Dehydration responsive element binding protein

Dehydrin-like protein

DNA binding zinc finger protein; Pspzf

ERD15 protein

Fiber protein Fb11

Fiber protein Fb19 (fragment)

Fiber protein Fb2

Glyceraldehyde 3-phosphate dehydrogenase, cytosolic

Histone H2A

Kinesin-like protein; 73641–79546

Late embryogenesis-like protein (Fragment) (LEA-Prot)

Lipoxygenase (EC 1.13.11.12)

Lipoxygenase (EC 1.13.11.12)

Metalloendopeptidase

Metallothionein-like protein 1; MT-1

Metallothionein-like protein 2; MT-2

Nonspecific lipid-transfer protein precursor; LTP

P-type H⁺-ATPase

P-type H⁺-ATPase

Prolyl 4-hydroxylase, alpha subunit-like protein

Protein phosphatase 2C

Putative imbibition protein

Root-specific metal transporter

Rubisco activase

RuBisCO large subunit-binding protein subunit alpha

Thiolprotease

Transcription factor DRE-binding factor 2

Translation initiation factor 5A

Trehalose-6-phosphate phosphatase

Ubiquitin conjugating enzyme

Ubiquitin conjugating enzyme

Ubiquitin conjugating protein

UDP-glucose pyrophosphorylase

Vignain precursor (EC 3.4.22)

Vignain precursor; cysteine proteinase EP-C1