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Table 4 List and characteristics of the non-fungal genomes archived in SNUGB.

From: SNUGB: a versatile genome browser supporting comparative and functional fungal genomics

Speciesa

Size (Mb)

# of ORFs

# of Exons

Cb

Ib

Eb

Source

Refs

Chloroplastida (Kingdom)e

        

   Streptophyta (Phylum)

        

Arabidopsis thaliana

119.2

28,581

150,369

5

Y

N

TAIR

[33]

Carica papaya

271.7

N

N

N

N

N

PGSC

[84]

Glycine max

996.9

62,199

281,102

N

N

N

JGI

N

Lycopersicon esculentum c

39.9

8,725

29,707

N

Y

N

SOL

N

Medicago truncatula

278.7

38,334

122,889

8

Y

N

MTGSP

[85–87]

Oryza sativa var. Indicad

426.3

49,710

N

N

N

N

BGI

[88, 89]

Oryza sativa var. Japonica

372.1

66,710

319,140

12

Y

N

IRGSP

[89, 90]

Populus trichocarpa

485.5

45,555

193,687

N

Y

N

JGI

[91]

Ricinus communis d

362.5

38,613

N

N

N

N

TIGR

N

Selaginella moellendorffii

212.8

22,285

124,645

N

Y

N

JGI

N

Sorghum bicolor

738.5

36,338

165,149

11

Y

N

JGI

N

Vitis vinifera

497.5

30,434

149,351

19

Y

N

GS

[92]

Zea mays d

2,314.7

420,732

N

N

N

N

MGSP

N

Metazoa (Kingdom)

        

   Arthropoda (Phylum)

        

Apis mellifera

235.2

11,062

71,496

N

N

N

HBGP

[93]

Acyrthosiphon pisum

446.6

N

N

N

N

N

BCM

N

Bombyx mori

397.7

21,302

82,381

N

N

N

BGI

[94]

Drosophila ananassae

231.0

15,276

56,595

N

N

N

FB

[95]

Drosophila erecta

152.7

15,324

56,924

N

N

N

FB

[95]

Drosophila grimshawi

200.5

15,270

56,647

N

N

N

FB

[95]

Drosophila melanogaster

168.7

20,923

96,745

N

N

N

FB

[96]

Drosophila mojavensis

193.8

14,849

55,013

N

N

N

FB

[95]

Drosophila persimilis

188.4

17,235

59,116

N

N

N

FB

[95]

Drosophila pseudoobscura

152.7

16,363

57,864

N

N

N

FB

[97]

Drosophila sechellia

166.6

16,884

58,584

N

N

N

FB

[95]

Drosophila simulans

137.8

15,983

54,294

N

N

N

FB

[95]

Drosophila virilise

206.0

14,680

55,005

N

N

N

FB

[95]

Drosophila willistoni

235.5

15,816

56,641

N

N

N

FB

[95]

Drosophila yakuba

165.7

15,423

59,098

N

N

N

FB

[95]

Glossina morsitans

205.7

N

N

N

N

N

TIGR

N

Nasonia vitripennis

239.6

27,957

98,570f

N

N

N

BCM

N

Tribolium castaneum

152.1

14,274

58,381f

N

N

N

BCM

N

   Nematoda (Phylum)

        

Caenorhabditis elegans

100.3

26,902

175,232

7

N

N

WB

[34]

Caenorhabditis briggsae d

108.5

20,669

N

N

N

N

WB

[98]

Caenorhabditis remanei

145.4

N

N

N

N

N

WB

N

   Vertebrata (Phylum)

        

Homo sapiens Celera assembly

2,828.4

28,057

273,999

N

N

N

NCBI

[99]

Homo sapiens HuRef assembly

2,843.9

27,937

273,135

N

N

N

NCBI

[100]

Homo sapiens NCBI Reference

2,870.8

29,319

284,553

N

N

N

NCBI

[100]

Homo sapiens

3,665.5

43,570

452,099

29

N

N

EM

[100]

Total

21,241.0

1,294,281

4,142,169

7

8

0

  
  1. aA indicates anamorph name and T presents teleomorph name of fungi
  2. bC means chromosomes, I indicates InterPro, and E presents EST.
  3. cIncomplete coverage of genome information
  4. dInsufficient exon/intron information
  5. eTaxonomy based on [101]
  6. fORFs and exons were predicted by AUGUSTUS 2.0.3 with species-specific training datasets [55].
  7. 'Y' indicates the existence of information in each field, and 'N' indicates the lack of information.