BMC Genomics

Table 2 Allele frequency estimates for the six SNPs from pooled DNA samples*

From: Microarray-based estimation of SNP allele-frequency in pooled DNA using the Langmuir kinetic model

			Allele Frequency
SNP	Allele	Measure	Poo1 1	Poo1 2	Poo1 3	Poo1 4	Poo1 5	Poo1 6	Poo1 7	Poo1 8	Poo1 9	Poo1 10	Poo1 11	Pool 12
ESR1E-U11	T	Actual	0.05	0.10	0.20	0.30	0.40	0.50	0.60	0.70	0.80	0.90	0.95	1.00
		Observed	0.053	0.108	0.19	0.308	0.396	0.514	0.604	0.704	0.804	0.894	0.949	0.988
		SD	0.014	0.017	0.039	0.035	0.025	0.029	0.023	0.031	0.03	0.025	0.016	0.014
ESR1F-U21	A	Actual	0.05	0.10	0.20	0.30	0.40	0.50	0.60	0.70	0.80	0.90	0.95	1.00
		Observed	0.051	0.113	0.195	0.307	0.395	0.509	0.599	0.708	0.799	0.906	0.943	0.992
		SD	0.017	0.03	0.036	0.031	0.026	0.023	0.022	0.023	0.041	0.02	0.021	0.011
TGFB1D-U2	G	Actual	0.05	0.10	0.20	0.30	0.40	0.50	0.60	0.70	0.80	0.90	0.95	1.00
		Observed	0.057	0.107	0.2	0.307	0.405	0.503	0.603	0.706	0.804	0.893	0.951	0.99
		SD	0.011	0.02	0.033	0.034	0.03	0.028	0.025	0.027	0.03	0.026	0.014	0.014
HBB17	A	Actual	0.05	0.10	0.20	0.30	0.40	0.50	0.60	0.70	0.80	0.90	0.95	1.00
		Observed	0.057	0.107	0.208	0.319	0.392	0.499	0.616	0.706	0.815	0.884	0.95	0.988
		SD	0.011	0.021	0.031	0.034	0.031	0.027	0.031	0.027	0.032	0.031	0.017	0.013
HBB28	A	Actual	0.05	0.10	0.20	0.30	0.40	0.50	0.60	0.70	0.80	0.90	0.95	1.00
		Observed	0.056	0.108	0.208	0.322	0.407	0.504	0.612	0.71	0.815	0.908	0.951	0.99
		SD	0.015	0.022	0.031	0.032	0.035	0.018	0.025	0.028	0.032	0.025	0.02	0.01
HBB26	G	Actual	0.05	0.10	0.20	0.30	0.40	0.50	0.60	0.70	0.80	0.90	0.95	1.00
		Observed	0.06	0.103	0.211	0.309	0.401	0.508	0.609	0.71	0.814	0.908	0.95	0.987
		SD	0.012	0.02	0.023	0.026	0.029	0.015	0.021	0.028	0.031	0.025	0.023	0.017

*Each pooled DNA sample was measured five times.

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