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Figure 2 | BMC Genomics

Figure 2

From: Genomic sequence and activity of KS10, a transposable phage of the Burkholderia cepacia complex

Figure 2

Phage/Host DNA junction and putative transposase binding sites. (A) KS10 has integrated into an oxidoreductase gene of B. cenocepacia J2315. Within the J2315 genome, bases 1,728,819 through 1,766,551 are KS10 prophage sequence. Direction of transcription of surrounding genes is indicated with thick arrows, while the direction of transcription of KS10 genes is indicated with thin arrows. The diagram is not drawn to scale. (B) Uppercase letters indicate KS10 sequence while lowercase represent B. cenocepacia J2315 host DNA. Phage right end is on the left in this diagram due to its orientation in the J2315 genome, while the phage left end is on the right. (C) Four putative transposase binding sites at the terminal ends of KS10. The position and sequence of the four 15 nucleotide direct repeats that are predicted to be TnpA binding sites in KS10 are indicated. The L1 and L2 transposase binding sites, at the left end, are inverted relative to the R1 and R1 binding sites at the right end. All sequences are written 5'-3'. Consensus sequence is written in the direction of the R1 and R2 binding sites.

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