| MSLL-Sal | MSLL-Hpa | HMPR | MF | HC | RM | UF |
---|---|---|---|---|---|---|---|
Sequences1 | 30,046 | 50,686 | 40,299 | 133,806 | 172,600 | 191,715 | 49,364 |
Avg. size (bp) | 671 | 698 | 932 | 1172 | 1094 | 337 | 748 |
Retro | 20% | 20% | 11% | 26% | 12% | 4% | 64% |
Transposon | 0.6% | 0.9% | 0.7% | 0.5% | 0.7% | 0.3% | 0.6% |
MITE | 0.6% | 1.3% | 1.0% | 0.4% | 0.7% | 0.6% | 0.2% |
Centromere | 0.2% | 0.9% | 0.2% | 0.4% | 0.09% | 0.02% | 0.8% |
Telomere | 0.001% | 0.03% | 0.08% | 0.02% | 0.02% | 0.02% | 0.01% |
Ribosomal | 0.4% | 1.5% | 1.3% | 0.2% | 0.1% | 0.1% | 2.1% |
Unknown | 14% | 19% | 13% | 9% | 14% | 7% | 14% |
Total repeat | 37% | 42% | 28% | 38% | 27% | 12% | 82% |
EST Contigs | 31% | 16% | 22% | 25% | 21% | 22% | 7% |