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Table 3 Summary of de novo assembly of transcriptome sequence reads with reference genome

From: RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit

Sample

Clean reads

Genome map rate

Gene map rate

Expressed gene

Alternative splicing

SNP

RF1

44166280

4.42%

7.06%

11807

462

67521

RF2

45562458

4.31%

6.89%

12077

459

67845

  1. Clean reads, Genome map rate (%), Gene map rate (%), number of expressed genes, the number of alternative splicing events and the number of Single-nucleotide polymorphism (SNP) are shown in each column for blackberry Ripe Fruit samples (RF1 and RF2).