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Table 5 Assembly statistics

From: Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes

 

Published sequence

FD1

FD2

DTT1

DTT2

CsCl1

CsCl2

MG1

MG2

P22 No. of contigs

1

1

1

1

1

1

1

1

1

P22 largest contig (bp)a

41660

41737

41737

41737

41737

41737

41659

41737

41737

P22 coverage (x fold)

N/A

3651

3138

3925

4027

5489

4998

146

107

T7 No. of contigs

1

1

2

2

1

1

1

4

1

T7 largest contig (bp)

39937

39855

35301

35209

39344

39855

39855

35472

39855

T7 coverage (x fold)

N/A

256

220

257

273

168

202

16

11

T3 No. of contigs

1

1

4

4

2

1

1

2

1

T3 largest contig (bp)

38209

37540

33483

33392

37540

36121

37541

33656

36120

T3 coverage (x fold)

N/A

293

265

305

321

381

310

10

8

ɸVPE25 No. of contigs

1

1

1

1

1

1

1

1

2

ɸVPE25 largest contig (bp)

86524

86520

86522

86518

86542

86496

86505

86534

86540

ɸVPE25 coverage (x fold)

N/A

256

225

253

284

1.9

2.3

55

30

M13 No. of contigs

1

7

4

8

4

1

0

1

0

M13 largest contig (bp)

6407

1085

900

814

586

230

0

268

0

M13 coverage (x fold)

N/A

0.35

0.55

0.43

0.39

0.18

0

0.14

0

  1. a:Assemblies of the P22 genome from our datasets are slightly larger than the reference genome, which is likely due to the quasi-circular nature of the P22 genome, which makes it impossible for the assembly algorithm to determine the exact start and end of the genome.