From: Genome-wide identification and characterization of the bHLH gene family in tomato
 | Atchley et al. [ 5 ] | Toledo-Ortiz et al. [ 2 ] | This study | |||
---|---|---|---|---|---|---|
 | Position in the alignment | Consensus motif amino acid frequency within the bHLH domain | Position in the alignment | Amino acid frequency within the Arabidopsis bHLH domains | Position in the alignment | Amino acid frequency within the tomato bHLH domains |
Basic | 1 | R (61%), K (27%) | 1 | R (24%), K (22%) | 1 | K(28%), R(25%), N(11%) |
2 | R (77%), K (16%) | 2 | R (35%) | 2 | R(32%), K(11%) | |
9 | E (93%) | 13 | E (76%), A (10%) | 13 | E(75%), A(11%) | |
10 | R (81%), K (14%) | 14 | R (74%), K (14%) | 14 | R(76%), K(18%) | |
12 | R (91%) | 16 | R (91%) | 16 | R(94%) | |
Helix | 16 | I (35%), L (33%), V (23%) | 20 | I (52%), L (27%), M (12%) | 20 | I(53%), L(28%), M(17%) |
17 | N (74%) | 21 | N (51%), S (19%) | 21 | N(45%), S(26%) | |
20 | F (72%), L (14%), I (9%) | 24 | F (26%), L (26%), M (20%), I (14%) | 24 | L(28%), F(26%), M(19%), I(16%) | |
23 | L (98%) | 27 | L (100%) | 27 | L(99%) | |
24 | R (44%), K (35%) | 28 | Q (42%), R (35%) | 28 | Q(41%), R(37%) | |
Loop | 47 | K (58%), R (24%) | 39 | K (66%) | 36 | K(68%) |
Helix | 50 | K (93%) | 42 | K (45%), T (13%) | 47 | K(45%), T(21%) |
53 | I (74%), T (15%), V(7%) | 45 | M (33%), I (27%), V (16%), L (14%) | 50 | M(33%), I(28%), V(15%), L(14%) | |
54 | L (98%) | 46 | L (76%), V (14%) | 51 | L(78%), I(11%) | |
57 | A (76%) | 49 | A (60%), I (16%), V (12%) | 54 | A(60%), I(18%), V(11%), T(10%) | |
58 | I (31%), V (27%), T (23%) | 50 | I (63%), V (22%) | 55 | I(60%), V(25%) | |
60 | Y (77%) | 52 | Y (78%) | 57 | Y(74%), H(13%) | |
61 | I (69%), L (16%), V (8%) | 53 | I (40%), V (33%), L (13%) | 58 | I(43%), V(38%), L(13%) | |
64 | L (80%), M (7%) | 56 | L (93%) | 61 | L(97%) |