Table 1 SNP trait associations with the highest significance across different environments for six candidate intervals
From: High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
Nearest gene | Environment | Infinium array | Re-sequencing | ||||
|---|---|---|---|---|---|---|---|
SNP marker | p -value | Trait | SNP marker | p -value | Trait | ||
Potri.014G036500 | Clatskanie | scaffold_14_2980220 | 1.27E−05 | pyMBMS m/z 135 | scaffold_14_2986800 | 6.54E−05 | Glucose release |
(Amino acid transporter) | Corvallis | - | - | - | scaffold_14_2983445 | 1.14E−07 | 6-carbon sugars |
Surrey | scaffold_14_2977633 | 5.63E−04 | Arabinose | - | - | - | |
Potri.014G037200 | Clatskanie | scaffold_14_3028570 | 8.55E−04 | pyMBMS m/z 125 | scaffold_14_3025294 | 8.89E−05 | Glucose release |
(KANADI TF) | Corvallis | - | - | - | scaffold_14_3035343 | 8.64E−05 | Glucose release |
Native | scaffold_14_3028120 | 6.57E−06 | Glucose/xylose release | scaffold_14_3029359 | 4.43E-04* | Glucose/xylose release | |
Potri.014G089400 | Corvallis | scaffold_14_7043301 | 1.06E−05 | Xylose release | scaffold_14_7041563 | 4.63E-04* | 5-carbon sugars |
(ANGUSTIFOLIA TF) | Native | scaffold_14_7044284 | 6.84E−04 | Glucose/xylose release | scaffold_14_7044259 | 5.36E-04* | 6-carbon sugars |
Potri.014G089700 | Clatskanie | scaffold_14_7055338 | 1.32E−05 | pyMBMS m/z 120 | scaffold_14_7053121 | 1.96E−05 | 6-carbon sugars |
(Copper transporter) | Corvallis | - | - | - | scaffold_14_7062644 | 3.20E-04* | Xylose release |
Native | - | - | - | scaffold_14_7054885 | 3.36E-04* | S/G ratio | |
Surrey | scaffold_14_7053760 | 9.18E−05 | Average wood density | - | - | - | |
Potri.014G101900 | Clatskanie | scaffold_14_7971054 | 8.31E−05 | pyMBMS m/z 102 | - | - | - |
(Ca2 + −transporting ATPase) | Corvallis | - | - | - | scaffold_14_7970015 | 9.03E−06 | Xylose release |
Native | scaffold_14_7969314 | 1.55E−06 | 5-carbon sugars | scaffold_14_7966546 | 5.61E−05 | 5-carbon sugars | |
Potri.014G142700 | Clatskanie | scaffold_14_10865898 | 3.00E−05 | pyMBMS m/z 235 | scaffold_14_10886410 | 2.42E-04* | S/G ratio |
(Protein kinase) | Corvallis | - | - | - | scaffold_14_10855744 | 5.49E−07 | Xylose release |
Native | scaffold_14_10867394 | 5.59E−04 | Glucose release | - | - | - | |
Surrey | scaffold_14_10865898 | 7.99E−05 | Syringyl monomers | - | - | - | |