Skip to main content

Table 2 Top-ten DE genes after LPS or PMA-Ionomycin stimulation, T4 and T24

From: Genome-wide immunity studies in the rabbit: transcriptome variations in peripheral blood mononuclear cells after in vitro stimulation by LPS or PMA-Ionomycin

  

T4

T24

  

Gene symbol

FC 1

Adj.P.Val

Gene symbol

FC 1

Adj.P.Val

LPS

Up - regulation

CXCL11

3.20

4.11E-02

F3

50.10

2.91E-04

LMTK2

2.69

1.45E-02

IL6

26.96

2.09E-04

RETN

2.35

3.11E-02

SAA1

26.27

9.37E-04

IL12A

2.29

3.85E-02

IL1B

18.12

2.96E-03

HENMT1

2.28

4.87E-02

IL10

17.61

6.48E-04

UBE2D2

2.11

4.44E-02

IL36G

17.11

9.49E-05

EVA1B

2.10

4.96E-02

S100A12

15.74

4.69E-02

SPTBN4

1.95

3.85E-02

TNIP3

11.33

1.57E-03

PKHD1L1

1.56

4.11E-02

HBEGF

9.67

2.49E-05

NOS2

1.47

4.72E-02

CCL4

9.10

4.12E-02

Down - regulation

CTSE2

−3.38

3.11E-02

PALLD

−9.64

2.33E-05

CHI3L1

−2.90

3.44E-02

MLANA

−8.12

4.55E-07

SAMHD1

−2.90

3.85E-02

DEFB1

−6.9

3.05E-03

CLEC4D

−2.89

3.28E-02

ATP6V0D2

−6.59

4.25E-06

ALDOA

−2.83

1.92E-02

CLEC7A

−6.23

6.12E-06

TKT

−2.82

2.25E-02

SLAMF7

−6.09

1.86E-04

ATP6V0B

−2.79

1.25E-02

ASPA

−5.15

3.65E-04

PGAM1

−2.78

3.84E-02

CTBS

−4.98

3.24E-04

COMT

−2.78

6.21E-03

BPI

−4.92

5.73E-03

FHOD1

−2.78

1.63E-02

MPEG1

−4.46

1.65E-03

PMA - Ionomycin

Up - regulation

CSF23

227.98

5.78E-12

CSF23

57.58

1.99E-10

IL133

144.98

4.40E-18

BCO24

51.95

1.07E-13

IL43

105.19

7.22E-12

CD704

34.74

2.65E-11

NFKBID3

61.72

3.67E-14

RGCC3

31.77

4.15E-12

TBX213

57.61

1.40E-14

SPRY13

29.99

6.87E-17

SPRY13

53.40

2.41E-18

ZBTB323

29.31

1.26E-11

IL23

40.01

9.61E-18

CCNB14

21.20

3.78E-11

RGCC3

33.61

5.83E-12

I23

20.36

1.07E-15

MMP33

33.33

3.67E-14

LAG33

19.70

7.93E-12

IL103

33.33

2.28E-06

NCAPG4

18.80

2.07E-12

Down - regulation

FAM26F

−48.36

3.10E-11

S100A83

−146.61

4.01E-08

RBP43

−32.07

2.32E-08

RBP43

−67.53

4.27E-10

TRAF3IP33

−21.39

6.70E-11

MGP

−58.62

4.98E-13

IL163

−18.62

4.17E-10

DEFB1

−51.43

6.61E-09

LTB3

−18.29

1.24E-07

S100A123

−42.78

1.89E-04

TM4SF53

−16.79

1.27E-09

ACTA2

−40.95

1.71E-12

CD79B

−16.07

1.37E-06

LTB3

−33.98

2.45E-09

MYRFL3

−15.90

3.67E-14

PID13

−33.27

7.21E-09

TLR10

−15.62

7.66E-11

TM4SF53

−32.16

2.12E-11

TNFAIP8L23

−14.95

6.25E-05

CYBB3

−31.07

8.87E-12

  1. 1FC: fold change.
  2. 2Genes found to be DE in the same direction (either down- or up-regulated compared to mock-stimulation) at both T4 and T24 post-stimulation by LPS.
  3. 3Genes found to be DE in the same direction (either down- or up-regulated compared to mock-stimulation) at both T4 and T24 post-stimulation by PMA-Ionomycin.
  4. 4Genes that were down-regulated at T4 in contrast to T24.