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Table 3 Assembly statistics

From: Transcriptome changes in rice (Oryza sativa L.) in response to high night temperature stress at the early milky stage

Sample

Number of transcripts

Average size (bp)

N50 (bp)

Known transcripts

Novel transcripts

Number (%)

Number of genes

Number (%)

Number of genes

SC1

35,975

1,469.6

1,831

33,235 (92.38)

21,914

2,740 (7.62)

2194

SC2

39,333

1,507.2

1,899

36,022 (91.58)

23,528

3,311 (8.42)

2663

SC3

38,489

1,508.6

1,886

35,178 (91.40)

22,720

3,311 (8.60)

2641

ST1

40,989

1,394.4

1,802

37,256 (90.89)

23,998

3,733 (9.11)

2987

ST2

40,125

1,544.6

1,926

36,540 (91.07)

23,780

3,585 (8.93)

2837

ST3

40,972

1,584.6

1,983

37,026 (90.37)

23,759

3,946 (9.63)

3191

TC1

38,268

1,526.1

1,902

35,268 (92.16)

23,205

3,000 (7.84)

2398

TC2

35,272

1,264.2

1,547

32,639 (92.54)

22,862

2,633 (7.46)

2179

TC3

38,507

1,528.8

1,903

35,518 (92.24)

23,539

2,989 (7.76)

2397

TT1

42,377

1,590.2

2,007

38,090 (89.88)

24,419

4,287(10.12)

3458

TT2

40,585

1,399.2

1,823

36,939 (91.02)

23,603

3,646 (8.98)

2896

TT3

41,515

1,557.1

1,969

37,273 (89.78)

24,214

4,242(10.22)

3443

  1. “ST”, “SC”, “TT” and “TC” indicate the treatment and control of the heat-sensitive and -tolerant lines, respectively; “1”, “2” and “3” indicate three biological replicates.