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Table 1 Isolate overview

From: Genomic factors related to tissue tropism in Chlamydia pneumoniae infection

Isolate

Tissue type

Isolation source

Continent

Country

Year of isolation

Source

Accession

CWL029

respiratory

throat

Northamerica

USA (Atlanta)

before 1987

NCBI GenBank

NC_000922.1

AR39

respiratory

pharynx

Northamerica

USA (Seattle)

1983

NCBI GenBank

NC_002179.2

J138

respiratory

pharynx

Asia

Japan

1994

NCBI GenBank

NC_002491.1

TW183

conjunctival

conjunctiva

Asia

Taiwan

1965

NCBI GenBank

NC_005043.1

LPCoLN

respiratory

nasal swab (koala)

Australia

Australia

NA

NCBI GenBank

NC_017285.1

CM1

respiratory

sputum

Northamerica

USA (Atlanta)

1991

Black/ATCC

ERS640705

CV14

vascular

coronary artery

Europe

Germany (Mainz)

2002

Maass

ERS640706

CV15

vascular

coronary artery

Europe

Germany (Mainz)

2002

Maass

ERS640707

CWL011

respiratory

throat

Northamerica

USA (Atlanta)

1987/1988

Black/CDC

ERS640708

CWL029c

respiratory

throat

Northamerica

USA (Atlanta)

1991

Black/ATCC

ERS640709

DC9

NA

liver (frog)

Africa

Central African Republic

NA

Sachse

ERS640710

GiD

respiratory

respiratory tract

Europe

Germany (Gießen)

before 1997

Hegemann

ERS640711

H12

respiratory

respiratory tract

Europe

Finland

1991

Saikku

ERS640712

K7

respiratory

respiratory tract

Europe

Finland

1987

Saikku

ERS640713

MUL2216

respiratory

bronchoalveolar lavage

Europe

Germany (Lübeck)

2001

Maass

ERS640714

Panola

respiratory

respiratory tract

Europe

Finland

NA

Saikku

ERS640715

PB1

vascular

PBMC

Europe

Germany (Lübeck)

1997

Maass

ERS640716

PB2

vascular

PBMC

Europe

Germany (Lübeck)

1998

Maass

ERS640717

U1271

respiratory

respiratory tract

Europe

Sweden (Umea)

NA

Boman

ERS640718

UZG1

respiratory

respiratory tract

Europe

Belgium

before 1996

Ossewaarde/CDC

ERS640719

Wien1

vascular

carotid artery

Europe

Austria (Vienna)

1998- 1999

Apfalter

ERS640720

Wien2

vascular

femoral artery

Europe

Austria (Vienna)

1998- 1999

Apfalter

ERS640721

Wien3

vascular

infrarenal artery

Europe

Austria (Vienna)

1998- 1999

Apfalter

ERS640722

YK41

respiratory

nasopharynx

Asia

Japan (Hiroshima)

before 1992

Kanomoto/CDC

ERS640723

  1. Origin of all isolates used in the study. The genomes for the first five isolates are publicly available, genomes of all other isolates were newly sequenced in this study (study accession number: PRJEB8246); sample accessions are given for all newly sequenced genomes; NA: not available.