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Table 2 Comparison of tRNA genes in the two Bryopsis species, Tydemania expeditiones and two other species of Ulvophyceae ( Oltmannsiellopsis viridis and Pseudendoclonium akinetum )

From: The chloroplast genomes of Bryopsis plumosa and Tydemania expeditiones (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin

 

B. hyp

B. plu

T. exp

P. aki

O. vir

trnA(agc)

1*

    

trnA(cgc)

1*

    

trnA(ugc)

1,1*

1

1

2

2

trnC(gca)

1,1*

1

1

1

1

trnD(guc)

1,1*

1

1

1

1

trnE(cuc)

1*

    

trnE(uuc)

1

1

1

1

1

trnF(gaa)

1,1*

1

1

1

1

trnG(gcc)

1,1*

1

1

1

1

trnG(ucc)

1,1*

2

1

1

1

trnH(gug)

1,1*

1

1

1

1

trnI(aau)

1*

    

trnI(cau)

1

1

1

1

 

trnI(gau)

1

1

1

2

2

trnK(cuu)

1*

    

trnK(uuu)

1

1

1

1

1

trnL(caa)

1*

 

1

1

 

trnL(uaa)

1

1

1

1

1

trnL(uag)

1

1

1

1

1

trnL(gag)

  

1

  

trnM(cau)a

1*

    

trnMe(cau)

1

1

1

1

1

trnMf(cau)

1

1

1

1

1

trnN(guu)

1,1*

1

1

1

1

trnP(agg)

1*

    

trnP(ugg)

1,1*

1

1

1

1

trnQ(cug)

1*

    

trnQ(uug)

1

1

1

1

1

trnR(acg)

1,1*

1

1

1

1

trnR(ucg)

1*

    

trnR(ccu)

1*

  

1

1

trnR(ucu)

1

1

1

1

1

trnS(gcu)

1,1*

1

1

1

1

trnS(uga)

1

1

1

1

1

trnT(agu)

1*

    

trnT(ugu)

1

1

1

1

1

trnV(acc)

1*

    

trnV(cac)

1*

    

trnV(uac)

1

1

1

1

1

trnW(cca)

1,1*

1

1

1

1

trnY(gua)

1,1*

1

1

1

1

Total

53

27

28

27

27

Unique

40

26

28

27

27

  1. aThe trnM(cau) gene situated in the large tRNA region in B. hypnoides showed similarity (blastn E value < 2e-10) with land plant nuclear encoded tRNA-Met initiator (Met-tRNA-i) genes.
  2. Numbers indicate gene copy. An asterisks indicates that the gene or gene copy is situated in the large tRNA region in B. hypnoides (Additional file 2). B. hyp = Bryopsis hypnoides, B. plu = B. plumosa, T. exp = Tydemania expeditiones, P. aki = Pseudendoclonium akinetum, O. vir = Oltmannsiellopsis viridis.