Endogenous siRNAs and piRNAs derived from transposable elements and genes in the malaria vector mosquito Anopheles gambiae

Biryukova, Inna; Ye, Tao

doi:10.1186/s12864-015-1436-1

Table 2 The top 30 abundant TE-associated piRNA clusters in An. gambiae

From: Endogenous siRNAs and piRNAs derived from transposable elements and genes in the malaria vector mosquito Anopheles gambiae

chr	Start	End	Length	Unique read number	Total read number	S unique read number	AS unique read number	S total read number	AS total read number
chrX	22 952 163	23 481 504	529 341	12 617	524 714	5 662	6 955	306 526	218 188
chrX	23 518 519	23 797 847	279 328	6 050	287 157	3 153	2 897	185 847	101 310
chrX	24 283 538	24 392 789	109 251	5 931	234 948	1 943	3 988	67 057	167 891
chrX	3 290 550	3 362 878	72 328	4 494	215 967	633	3 861	19 123	196 844
chrX	21 838 300	22 218 800	380 500	5 680	179 338	1 955	3 725	64 596	114 742
chrX	11 596 752	11 650 633	53 881	4 346	172 217	244	4 102	6 293	165 924
chrX	20 625 699	20 944 044	318 345	4 898	158 982	1 456	3 442	39 427	119 555
chrX	22 577 869	22 914 102	336 233	4 284	146 406	1 298	2 986	40 480	105 926
chrX	20 176 462	20 391 304	214 842	4 165	128 553	1 350	2 815	42 931	85 622
chrX	20 970 879	21 149 974	179 095	3 407	116 074	1 015	2 392	34 978	81 096
chrX	22 313 238	22 549 636	236 398	2 653	69 651	875	1 778	23 572	46 079
chrX	20 428 815	20 603 496	174 681	2 446	59 885	774	1 672	18 433	41 452
chr2L	89	481 414	481 325	7 676	208 890	2 085	5 591	58 609	150 281
chr2L	502 755	1 019 850	517 095	6 552	196 698	1 851	4 701	48 018	148 680
chr2L	5 079 181	5 342 762	263 581	3 826	140 432	932	2 894	22 110	118 322
chr2L	1 641 056	1 919 208	278 152	3 433	90 588	952	2 481	21 187	69 401
chr2L	5 363 783	5 645 438	281 655	2 881	86 167	641	2 240	13 621	72 546
chr2R	57 973 180	58 126 345	153 165	16 504	712 727	1 404	15 100	39 319	673 408
chr2R	45 825 828	46 052 229	226 401	3 625	116 909	1 554	2 071	48 943	67 966
chr2R	60 529 536	60 775 476	245 940	3 333	98 675	944	2 389	21 048	77 627
chr2R	60 857 789	61 165 860	308 071	2 595	74 290	604	1 991	14 479	59 811
chr2R	54 533 041	54 631 947	98 906	941	66 728	228	713	8 913	57 815
chr2R	59 364 672	59 452 054	87 382	2 003	64 267	920	1 083	34 913	29 354
chr3L	20 851 509	20 867 249	15 740	3 210	186 221	22	3 188	429	185 792
chr3L	904 183	1 256 919	352 736	3 945	115 876	1 341	2 604	29 346	86 530
chr3L	4 482 742	4 823 855	341 113	3 506	95 767	1 122	2 384	28 570	67 197
chr3L	1 353 818	1 548 403	194 585	2 203	75 971	1 007	1 196	33 069	42 902
chr3L	4 891 896	5 007 445	115 549	1 781	61 830	507	1 274	14 210	47 620
chr3L	4 238 059	4 454 649	216 590	1 856	61 591	699	1 157	23 730	37 861
chr3R	23 627 315	23 733 275	105 960	2 054	75 377	363	1 691	8 532	66 845
chr3R	43 053 124	43 185 525	132 401	2 040	60 619	722	1 318	19 578	41 041

S - sense orientation with respect to the genomic coordinates, AS - antisense orientation with respect to the genomic coordinates.

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ISSN: 1471-2164

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