Transcriptional profile of sweet orange in response to chitosan and salicylic acid

BMC Genomics

Table 1 RNA-seq raw data and number of differentially expressed transcripts

Treatment	Number of reads	CG (%) ^†	Q (20%) ^‡	Transcripts with changed expression ^§
CHI	11,691,216	43.39	92.68	640
H*	13,253,654	43.36	92.56	-
SA	14,833,464	43.35	93.92	1,425
E*	12,279,260	43.64	92.34	-

*H and E represent the controls for CHI and SA, respectively.
^†CG represents the quantity of CG bases in the sequences.
^‡Corresponds to sequences with Phred quality > 20, which was higher than 92% for all RNA-seq libraries.
^§Statistical significance (P ≤ 0.05).
All transcripts (up- and down-regulated) were obtained by RNA-seq after treatment with elicitors when compared to controls, according to Cuffdiff analysis.

ISSN: 1471-2164