From: Genomic variation in tomato, from wild ancestors to contemporary breeding accessions
Gene | Primer sequence (5′ to 3′) | Polymorphism | Restriction enzyme | Wild-type allele size (bp) | Cultivated allele size (bp) | Reference |
---|---|---|---|---|---|---|
FW2.2/CNR | CATATAAAGTGTACTGACCGTCA | SNP | Tsp45I | 168 | 149 | This paper |
CTGTCCTATTCAAGAGGTAAATGAG | ||||||
FW3.2/SlKLUH | AAAGTCGAATAAATTAGATGAACTTGA | SNP | Hpy188I | 326 | 304 | Chakrabarti et al. [29] |
ATTGGGTCTCTCCTCGCTCT | ||||||
LC | GCCGAACACATCAACATTTC | SNP | HindIII | 260 | 235 | *Muños et al. [28] |
CCTTTTCCTAAAAGATTTGGCATGAAG | ||||||
FAS | CCAATGATAATTAAGATATTGTGACG | Inversion | - | 466 | 335 | Rodríguez et al. [30] |
ATGGTGGGGTTTTCTGTTCA | ||||||
CAGAAATCAGAGTCCAATTCCA | ||||||
OVATE | AAGCTGATACCGTGTAGTGTGG | SNP | DdeI | 122 | 109 | *Rodriguez et al. [30] |
AATGCTTTCCGTTCAACGAC | ||||||
SUN | TTTACCCGATGTGAAAACGA | RFLP | EcoRV | An additional 4.3-kb fragment | Xiao et al. [26] | |
CATCAATAGTCCAAGGGGAAA |