Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut

BMC Genomics

Table 2 Descriptive statistics on genomes

Strain/species	Genome size ¹ (bp)	Plasmids	Total plasmid size (bp)	Phage regions	GC content	# of CDS ²	Mean gene size (bp) ³	rRNA (5S, 16S, 23S)	tRNA	Pseudo-genes	Partial CDS ⁴	# Unique genes ⁵
Bma6	1738065	None	NA	None	61	1327	1146	multiple	46	7	11	78
Bin2	2087605	None	NA	1	61	1569	1159	multiple	45	8	14	45
Bin7	2120336	None	NA	1	61	1576	1172	multiple	45	19	2	49
Hma3	2217062	2	15107	1	60	1672	1161	multiple	46	18	7	44
L. apis	1542091	1	137911	None	37	1498	964	multiple	49	14	10	180
L. helsingborgensis	1868619	1	123906	None	36	1730	986	multiple	49	20	18	198
L. melliventris	1956081	2	144786	1	36	1891	961	multiple	50	22	12	213
L. kimbladii	2130297	2	15247	1	36	1872	982	multiple	50	22	19	225
L. kullabergensis	2079016	None	NA	2	36	1844	975	multiple	50	21	21	199
L. mellis	1790038	None	NA	1	37	1572	976	multiple	53	18	7	258
L. mellifer	1681465	2	104625	2	39	1568	967	multiple	49	21	24	254

¹Total size of contigs larger than 500 bp, excluding contigs annotated as plamids.
²CDS, excluding pseudogenes and partial genes.
³CDS (excluding pseudogenes and partial genes) divided by total length.
⁴CDS overlapping a contig border.
⁵Genes larger than 300 bp with no significant blast-hits found during annotation.

ISSN: 1471-2164